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Keywords {🔍}

urt, mrnas, fig, pubmed, data, supplementary, article, rna, uridylation, google, scholar, cas, mrna, polya, arabidopsis, tails, plants, gfp, central, proteins, expression, protein, decapping, accumulation, complex, dcp, tail, xrn, ccrnot, motif, domain, decay, plant, nature, deadenylated, analysis, sequences, replicates, ips, uridylated, cell, samples, interaction, urtda, molecular, performed, number, control, atg, biological,

Topics {✒️}

nature portfolio writing—review & editing privacy policy transgene-induced post-transcriptional silencing uk/pride/archive/projects/pxd018672] advertising quasi-poisson regression model eif4e-binding protein 4e-t29 service reprints overexpressed urt1d491/3a sequesters reporting summary pap/oas1 substrate-binding domain nature 548 nature 404 nature ice-cold lysis buffer molecular research center gst-eif4e-k119a protein70 discussion uridylation dms-mapseq substantially revise tail-seq library preparation small rna-seq libraries rdr-dependent sirna production a-rich-tailed gfp mrnas prevent transgene-induced silencing additional decay factors gov/geo/query/acc nanopore direct-rna libraries m1-urt1d491/3a ips revealed mutated 6his-gst-caf1b proteins ms/ms fragmentation spectra social media dot color code small rna-seq data c-terminal rgg repeats30 original author additional decapping factors bash source code rna-binding protein gigyf2 bioinformatics enrichment tools recombinant proteins 6his-gst additional assays confirmed anti-mouse igg coupled generated tail-seq libraries illumina base-calling software urt1-mediated uridylation triggers monoclonal c-myc antibody helical leucine-rich motifs trans-acting sirna pathway

Questions {❓}

• But why has a bypass of the LSm1-7 recruitment been selected during plant evolution?

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         description:Uridylation is a widespread modification destabilizing eukaryotic mRNAs. Yet, molecular mechanisms underlying TUTase-mediated mRNA degradation remain mostly unresolved. Here, we report that the Arabidopsis TUTase URT1 participates in a molecular network connecting several translational repressors/decapping activators. URT1 directly interacts with DECAPPING 5 (DCP5), the Arabidopsis ortholog of human LSM14 and yeast Scd6, and this interaction connects URT1 to additional decay factors like DDX6/Dhh1-like RNA helicases. Nanopore direct RNA sequencing reveals a global role of URT1 in shaping poly(A) tail length, notably by preventing the accumulation of excessively deadenylated mRNAs. Based on in vitro and in planta data, we propose a model that explains how URT1 could reduce the accumulation of oligo(A)-tailed mRNAs both by favoring their degradation and because 3’ terminal uridines intrinsically hinder deadenylation. Importantly, preventing the accumulation of excessively deadenylated mRNAs avoids the biogenesis of illegitimate siRNAs that silence endogenous mRNAs and perturb Arabidopsis growth and development. TUTase mediated uridylation of mRNA promotes degradation. Here, Scheer, de Almeida et al. show that Arabidopsis TUTase URT1 interacts directly with the translation inhibitor and decay factor DECAPPING5 and suppresses siRNA biogenesis by preventing accumulation of deadenylated mRNAs
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      headline:The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis
      description:Uridylation is a widespread modification destabilizing eukaryotic mRNAs. Yet, molecular mechanisms underlying TUTase-mediated mRNA degradation remain mostly unresolved. Here, we report that the Arabidopsis TUTase URT1 participates in a molecular network connecting several translational repressors/decapping activators. URT1 directly interacts with DECAPPING 5 (DCP5), the Arabidopsis ortholog of human LSM14 and yeast Scd6, and this interaction connects URT1 to additional decay factors like DDX6/Dhh1-like RNA helicases. Nanopore direct RNA sequencing reveals a global role of URT1 in shaping poly(A) tail length, notably by preventing the accumulation of excessively deadenylated mRNAs. Based on in vitro and in planta data, we propose a model that explains how URT1 could reduce the accumulation of oligo(A)-tailed mRNAs both by favoring their degradation and because 3’ terminal uridines intrinsically hinder deadenylation. Importantly, preventing the accumulation of excessively deadenylated mRNAs avoids the biogenesis of illegitimate siRNAs that silence endogenous mRNAs and perturb Arabidopsis growth and development. TUTase mediated uridylation of mRNA promotes degradation. Here, Scheer, de Almeida et al. show that Arabidopsis TUTase URT1 interacts directly with the translation inhibitor and decay factor DECAPPING5 and suppresses siRNA biogenesis by preventing accumulation of deadenylated mRNAs
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         type:PostalAddress
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      address:
         name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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      address:
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      name:Hélène Scheer
      affiliation:
            name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg
            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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      name:Caroline de Almeida
      affiliation:
            name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg
            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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      affiliation:
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            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
               type:PostalAddress
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            name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg
            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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      affiliation:
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            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
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            address:
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      affiliation:
            name:International Institute of Molecular and Cell Biology
            address:
               name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
               type:PostalAddress
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            name:Institute of Genetics and Biotechnology, University of Warsaw
            address:
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            address:
               name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
               type:PostalAddress
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            name:Institute of Genetics and Biotechnology, University of Warsaw
            address:
               name:Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland
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            address:
               name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
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      affiliation:
            name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg
            address:
               name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
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      affiliation:
            name:International Institute of Molecular and Cell Biology
            address:
               name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
               type:PostalAddress
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            name:Institute of Genetics and Biotechnology, University of Warsaw
            address:
               name:Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland
               type:PostalAddress
            type:Organization
      name:Philippe Hammann
      affiliation:
            name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg
            address:
               name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
               type:PostalAddress
            type:Organization
      name:Hélène Zuber
      url:http://orcid.org/0000-0002-2132-4536
      affiliation:
            name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg
            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Dominique Gagliardi
      url:http://orcid.org/0000-0002-5871-7544
      affiliation:
            name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg
            address:
               name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
      name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
      name:Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland
      name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
      name:Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland
      name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
      name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
      name:Laboratory of RNA Biology, International Institute of Molecular and Cell Biology, Warsaw, Poland
      name:Faculty of Biology, Institute of Genetics and Biotechnology, University of Warsaw, Warsaw, Poland
      name:Plateforme Protéomique Strasbourg Esplanade du CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France
      name:Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg, France

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