We are analyzing https://link.springer.com/article/10.1007/s10265-017-0906-8.

Title:
Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants | Journal of Plant Research
Description:
Accumulation of an mRNA species is determined by the balance between the synthesis and the degradation of the mRNA. Individual mRNA molecules are selectively and actively degraded through RNA degradation pathways, which include 5′-3′ mRNA degradation pathway, 3′-5′ mRNA degradation pathway, and RNA-dependent RNA polymerase-mediated mRNA degradation pathway. Recent studies have revealed that these RNA degradation pathways compete with each other in mRNA turnover in plants and that plants have a hidden layer of non-coding small-interfering RNA production from a set of mRNAs. In this review, we summarize the current information about plant mRNA degradation pathways in mRNA turnover and discuss the potential roles of a novel class of the endogenous siRNAs derived from plant mRNAs.
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Keywords {🔍}

pubmed, article, google, scholar, cas, central, arabidopsis, mrna, rna, plant, cell, degradation, decapping, exosome, silencing, plants, zhang, required, sci, complex, mol, sirna, decay, biol, yeast, physiol, thaliana, protein, usa, development, stress, watanabe, turnover, pathway, proteins, gene, xrn, proc, natl, acad, chen, takeda, dcp, embo, res, vaucheret, cytoplasmic, wang, regulation, functions,

Topics {✒️}

genome-wide high-resolution mapping rdr-dependent sirna production month download article/chapter genome-wide pre-mrna splicing trans-acting sirna pathway rna exosome-mediated control rna quality control rna-mediated gene silencing rdr6-mediated rna silencing mrna-derived sirnas protein-mediated rna metabolism tail-dependent exonuclease atrrp41p nuclear quality control n6-methyladenosine-dependent regulation ta-sirna biogenesis endogenous sirnas derived quality-control mechanism producing trans-acting sirnas arabidopsis micro-rna biogenesis rna-directed dna methylation microrna-mediated translational repression 5′-end stem-loop structures messenger rna stability sequence-dependent manner rna degradation pathways suppressing rna silencing amplified rna silencing cuticular wax biosynthesis full article pdf natural virus resistance rna decay machines channel rna substrates english language editing eukaryotic rna exosome cytoplasmic mrna decay atxrn4 degrades mrna pre-mrna splicing prevents transgene silencing global mrna turnover proper mrna turnover mrna decay defects perez-amador ma posttranscriptional gene silencing heat stress tolerance ein2-directed translational regulation small rna duplexes trans-acting sirnas mammalian mrna turnover putative rna helicase rna helicases atmtr4

Questions {❓}

Barreau C, Paillard L, Osborne HB (2006) AU-rich elements and associated factors: are there unifying principles?
Christie M, Brosnan CA, Rothnagel JA, Carroll BJ (2011) RNA decay and RNA silencing in plants: competition or collaboration?

Schema {🗺️}

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         headline:Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants
         description:Accumulation of an mRNA species is determined by the balance between the synthesis and the degradation of the mRNA. Individual mRNA molecules are selectively and actively degraded through RNA degradation pathways, which include 5′-3′ mRNA degradation pathway, 3′-5′ mRNA degradation pathway, and RNA-dependent RNA polymerase-mediated mRNA degradation pathway. Recent studies have revealed that these RNA degradation pathways compete with each other in mRNA turnover in plants and that plants have a hidden layer of non-coding small-interfering RNA production from a set of mRNAs. In this review, we summarize the current information about plant mRNA degradation pathways in mRNA turnover and discuss the potential roles of a novel class of the endogenous siRNAs derived from plant mRNAs.
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            3′-5′ mRNA degradation
            5′-3′ mRNA degradation
            mRNA turnover
            RNA exosome
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            RNA quality control-siRNA
            RNA silencing
            Virus-activated siRNA
            Plant Sciences
            Plant Ecology
            Plant Physiology
            Plant Biochemistry
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      headline:Interconnections between mRNA degradation and RDR-dependent siRNA production in mRNA turnover in plants
      description:Accumulation of an mRNA species is determined by the balance between the synthesis and the degradation of the mRNA. Individual mRNA molecules are selectively and actively degraded through RNA degradation pathways, which include 5′-3′ mRNA degradation pathway, 3′-5′ mRNA degradation pathway, and RNA-dependent RNA polymerase-mediated mRNA degradation pathway. Recent studies have revealed that these RNA degradation pathways compete with each other in mRNA turnover in plants and that plants have a hidden layer of non-coding small-interfering RNA production from a set of mRNAs. In this review, we summarize the current information about plant mRNA degradation pathways in mRNA turnover and discuss the potential roles of a novel class of the endogenous siRNAs derived from plant mRNAs.
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         3′-5′ mRNA degradation
         5′-3′ mRNA degradation
         mRNA turnover
         RNA exosome
         RNA-dependent RNA polymerase
         RNA quality control-siRNA
         RNA silencing
         Virus-activated siRNA
         Plant Sciences
         Plant Ecology
         Plant Physiology
         Plant Biochemistry
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            address:
               name:Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, USA
               type:PostalAddress
            type:Organization
      name:Kazuki Motomura
      affiliation:
            name:Institute of Transformative Bio-Molecules, Nagoya University
            address:
               name:Institute of Transformative Bio-Molecules, Nagoya University, Nagoya, Japan
               type:PostalAddress
            type:Organization
      name:Naoyoshi Kumakura
      affiliation:
            name:Center for Sustainable Resource Science, RIKEN
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               name:Center for Sustainable Resource Science, RIKEN, Yokohama, Japan
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