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Title[redir]:
Targeted degradation of extracellular proteins: state of the art and diversity of degrader designs | Journal of Hematology & Oncology | Full Text
Description:
Selective elimination of proteins associated with the pathogenesis of diseases is an emerging therapeutic modality with distinct advantages over traditional inhibitor-based approaches. This strategy, called targeted protein degradation (TPD), is based on hijacking the cellular proteolytic machinery using chimeric degrader molecules that physically link the target protein of interest with the degradation effectors. The TPD era began with the development of PROteolysis TAtrgeting Chimeras (PROTACs) in 2001, with various methods and applications currently available. Classical PROTAC molecules are heterobifunctional chimeras linking target proteins with E3 ubiquitin ligases. This induced interaction leads to the ubiquitylation of the target protein, which is needed for its recognition and subsequent degradation by the cellular proteasomes. However, this technology is limited to intracellular proteins since the effectors involved (E3 ubiquitin ligases and proteasomes) are located in the cytosol. The related methods for selective destruction of proteins present in the extracellular space have only emerged recently and are collectively termed extracellular TPD (eTPD). The prototypic eTPD technology utilizes LYsosomal TArgeting Chimeras (LYTACs) that link extracellular target proteins (secreted or membrane-associated) to lysosome-targeting receptors (LTRs) on the cell surface. The resulting complex is then internalized by endocytosis and trafficked to lysosomes, where the target protein is degraded. The successful elimination of various extracellular proteins via LYTACs and related approaches has been reported, including several important targets in oncology that drive tumor growth and dissemination. This review summarizes current progress in the eTPD field and focuses primarily on the respective technological developments. It discusses the design principles and diversity of degrader molecules and the landscape of available targets and effectors that can be employed for eTPD. Finally, it emphasizes current open questions, challenges, and perspectives of this technological platform to promote the expansion of the eTPD toolkit and further development of its therapeutic applications.
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Keywords {🔍}
pubmed, article, degradation, google, scholar, cas, proteins, protein, etpd, degraders, molecules, receptor, degrader, central, targeted, target, cell, chem, targeting, extracellular, chimeras, poi, membrane, ubiquitin, lysosomal, internalization, wang, zhang, approaches, protac, ltrs, ligands, antibodies, small, approach, complex, targets, ltr, tpd, field, design, ligases, protacs, chimera, specific, cancer, study, recent, signaling, endocytosis,
Topics {✒️}
multiple serine-o-mannose-6-phosphonate r-spondin/lgr5/rnf43 module cation-independent mannose-6-phosphate receptor direct endosome/lysosome targeting decrease low-density lipoprotein lysosome-targeting chimeras mediated central signaling hubs lysosome-targeting chimeras evolve e2 ubiquitin-conjugating enzymes degrading pro-inflammatory cytokines dileucine-based peptide sfhddsdedllhi synthetic alpha-helix mimetics dual-targeted proteins degradation polyspecific integrin-binding peptide residue egfr-targeting peptide stem cell-derived cytokines called lysosome-targeting chimeras snca/α-synuclein aggregates single-pass membrane protein stem-cell e3 ligase passive tumour-targeting strategies igf2r/ci-m6pr-based degraders full size image lysosome-targeting protein degradation triantennary n-acetylgalactosamine conjugates mannose 6-phosphate/igf2 receptor tested peptide-based signaltacs computer-assisted protac design unlike endocytosis-related pathways dcaf16-based covalent handle effective atg8-based attecs computer-aided degrader design central nervous system undergo clathrin-mediated endocytosis specifically recognizing ci-m6pr designing tissue-specific degraders resembling α-helical peptides promote tissue-specific regeneration includes antibody-based ligands membrane-localized target protein site-specific chemoenzymatic conjugation glycine-based internalization motif direct endocytosis-dependent methods durable pd-l1 degradation htt-lc3 linker compounds natural high-affinity ligand classical lytac-related etpd cell surface-located proteins cd24/siglec-10 signaling pathway site-specific antibody conjugation
Questions {❓}
- Targeted protein degradation: the new frontier of antimicrobial discovery?
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headline:Targeted degradation of extracellular proteins: state of the art and diversity of degrader designs
description:Selective elimination of proteins associated with the pathogenesis of diseases is an emerging therapeutic modality with distinct advantages over traditional inhibitor-based approaches. This strategy, called targeted protein degradation (TPD), is based on hijacking the cellular proteolytic machinery using chimeric degrader molecules that physically link the target protein of interest with the degradation effectors. The TPD era began with the development of PROteolysis TAtrgeting Chimeras (PROTACs) in 2001, with various methods and applications currently available. Classical PROTAC molecules are heterobifunctional chimeras linking target proteins with E3 ubiquitin ligases. This induced interaction leads to the ubiquitylation of the target protein, which is needed for its recognition and subsequent degradation by the cellular proteasomes. However, this technology is limited to intracellular proteins since the effectors involved (E3 ubiquitin ligases and proteasomes) are located in the cytosol. The related methods for selective destruction of proteins present in the extracellular space have only emerged recently and are collectively termed extracellular TPD (eTPD). The prototypic eTPD technology utilizes LYsosomal TArgeting Chimeras (LYTACs) that link extracellular target proteins (secreted or membrane-associated) to lysosome-targeting receptors (LTRs) on the cell surface. The resulting complex is then internalized by endocytosis and trafficked to lysosomes, where the target protein is degraded. The successful elimination of various extracellular proteins via LYTACs and related approaches has been reported, including several important targets in oncology that drive tumor growth and dissemination. This review summarizes current progress in the eTPD field and focuses primarily on the respective technological developments. It discusses the design principles and diversity of degrader molecules and the landscape of available targets and effectors that can be employed for eTPD. Finally, it emphasizes current open questions, challenges, and perspectives of this technological platform to promote the expansion of the eTPD toolkit and further development of its therapeutic applications.
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headline:Targeted degradation of extracellular proteins: state of the art and diversity of degrader designs
description:Selective elimination of proteins associated with the pathogenesis of diseases is an emerging therapeutic modality with distinct advantages over traditional inhibitor-based approaches. This strategy, called targeted protein degradation (TPD), is based on hijacking the cellular proteolytic machinery using chimeric degrader molecules that physically link the target protein of interest with the degradation effectors. The TPD era began with the development of PROteolysis TAtrgeting Chimeras (PROTACs) in 2001, with various methods and applications currently available. Classical PROTAC molecules are heterobifunctional chimeras linking target proteins with E3 ubiquitin ligases. This induced interaction leads to the ubiquitylation of the target protein, which is needed for its recognition and subsequent degradation by the cellular proteasomes. However, this technology is limited to intracellular proteins since the effectors involved (E3 ubiquitin ligases and proteasomes) are located in the cytosol. The related methods for selective destruction of proteins present in the extracellular space have only emerged recently and are collectively termed extracellular TPD (eTPD). The prototypic eTPD technology utilizes LYsosomal TArgeting Chimeras (LYTACs) that link extracellular target proteins (secreted or membrane-associated) to lysosome-targeting receptors (LTRs) on the cell surface. The resulting complex is then internalized by endocytosis and trafficked to lysosomes, where the target protein is degraded. The successful elimination of various extracellular proteins via LYTACs and related approaches has been reported, including several important targets in oncology that drive tumor growth and dissemination. This review summarizes current progress in the eTPD field and focuses primarily on the respective technological developments. It discusses the design principles and diversity of degrader molecules and the landscape of available targets and effectors that can be employed for eTPD. Finally, it emphasizes current open questions, challenges, and perspectives of this technological platform to promote the expansion of the eTPD toolkit and further development of its therapeutic applications.
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