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Title:
Consequential considerations when mapping tRNA fragments | BMC Bioinformatics | Full Text
Description:
We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool generates.
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Keywords {🔍}
trna, pubmed, trnas, article, genome, human, tdrmapper, mapping, space, reads, telonis, sequences, trfs, sequence, google, scholar, bmc, rna, false, tdr, central, authors, mers, trf, fragments, rigoutsos, origin, loher, kirino, dominant, tdrs, data, nuclear, genomic, fragment, mature, mitochondrial, important, cookies, information, published, bioinformatics, considerations, sethupathy, trnaderived, locations, negative, honda, privacy, tool,
Topics {✒️}
gov/projects/genome/assembly/grc/human/index authors implicate trna-halves springer nature transfer rna-derived fragments trna exon-exon junctions i-trf quantifying trna-derived rnas mitochondrial trna-lookalikes human trna-derived rnas yohei kirino & isidore rigoutsos full-length glycine trna junction-spanning sequence acttctaattcaaa mapping trna fragments multiple distinct trfs sequence ctcactggaacct-cca occurs bmc res notes 3′-trfs sequenced reads privacy choices/manage cookies repeating nature author information authors human trfs bmc bioinformatics bmc bioinformatics 17 creative commons license small functional rna rna sequencing data distinct trfs trna fragments deep sequencing data bona fide trnas abundant trfs personalized transcriptomes reveals 497 trna-lookalike sequences internal trna fragment genomic trna database state privacy rights candidate 3′-trfs produce trfs true trfs bmc biol bmc genomics �dominant” trfs incomplete trna sequences repeatmasker breast cancer heterogeneity typical mature trna cell/tissue type authors scientific editing 1186/s12859-016-0921-0 share identifying transfer rna
Questions {❓}
- Mitochondrial tRNA-lookalikes in nuclear chromosomes: could they be functional?
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headline:Consequential considerations when mapping tRNA fragments
description:We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool generates.
datePublished:2016-03-10T00:00:00Z
dateModified:2016-03-10T00:00:00Z
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Bioinformatics
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headline:Consequential considerations when mapping tRNA fragments
description:We examine several of the choices that went into the design of tDRmapper, a recently reported tool for identifying transfer RNA (tRNA) fragments in deep sequencing data, evaluate them in the context of currently available knowledge, and discuss their potential impact on the output that the tool generates.
datePublished:2016-03-10T00:00:00Z
dateModified:2016-03-10T00:00:00Z
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tRNA-lookalikes
tRNA fragments
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i-tRFs
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Bioinformatics
Microarrays
Computational Biology/Bioinformatics
Computer Appl. in Life Sciences
Algorithms
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