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skin, proteins, fig, tgfbi, pubmed, cell, article, supplementary, data, epscs, epidermal, google, scholar, krt, cas, ecm, expression, cells, analysis, wound, proliferation, ssp, protein, samples, epidermis, dermis, stem, tissues, epsc, control, group, nature, performed, human, healing, layers, central, including, treatment, tissue, proteome, growth, development, secondary, syphilis, days, study, results, biological, immunofluorescence,

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nature portfolio reporting summary privacy policy user-uploaded gene/measurement sets advertising supplementary data 1 supplementary data 2 supplementary data 3 supplementary data 4 supplementary data 5 supplementary data 6 supplementary data 7 supplementary data 8 transforming growth factor-β-induced higher-energy c-trap dissociation tgfβ-induced protein ig-h3 source data file social media complete protease inhibitors research design full access reprints nature 445 nature 461 nature heat-induced epitope retrieval additional 10 μl thermo fisher scientific wnt/β-catenin pathway based research avidin/biotin blocking kit induced protein ig-h3 source data transforming growth factor-beta methods human subjects abrogate kras-dependent tumors proteomics data generated matrix-digesting proteases mmp1 direct dia library data-independent acquisition 2 mg/ml dispase ii data analysis accuracy unphosphorylated β-catenin proteins17 nf-κb signaling pathway supplementary movies 1–5 supplementary movies 6–8 raw dia data supplementary figs supplementary fig neuronal synaptic plasticity

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• Sic transit gloria: farewell to the epidermal transit amplifying cell?

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         description:Human skin comprises stratified squamous epithelium and dermis with various stromal cells and the extracellular matrix (ECM). The basement membrane (BM), a thin layer at the top of the dermis, serves as a unique niche for determining the fate of epidermal stem cells (EpSCs) by transmitting physical and biochemical signals to establish epidermal cell polarity and maintain the hierarchical structure and function of skin tissue. However, how stem cell niches maintain tissue homeostasis and control wound healing by regulating the behavior of EpSCs is still not completely understood. In this study, a hierarchical skin proteome map is constructed using spatial quantitative proteomics combined with decellularization, laser capture microdissection, and mass spectrometry. The specific functions of different structures of normal native skin tissues or tissues with a dermatologic disease are analyzed in situ. Transforming growth factor-beta (TGFβ)-induced protein ig-h3 (TGFBI), an ECM glycoprotein, in the BM is identified that could enhance the growth and function of EpSCs and promote wound healing. Our results provide insights into the way in which ECM proteins facilitate the growth and function of EpSCs as part of an important niche. The results may benefit the clinical treatment of skin ulcers or diseases with refractory lesions that involve epidermal cell dysfunction and re-epithelialization block in the future. Ling Leng et al. construct a hierarchical skin proteome map and identify an extracellular matrix glycoprotein TGFBI, which is located in basement membrane and could enhance the growth and function of epidermal stem cells and promote wound healing.
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      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Jie Ma
      affiliation:
            name:Beijing Institute of Lifeomics
            address:
               name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
               type:PostalAddress
            type:Organization
      name:Qiyu Zhang
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Huizi Gong
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Dunqin Gao
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Yujie Wang
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Biyou Li
      affiliation:
            name:Beijing Institute of Lifeomics
            address:
               name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
               type:PostalAddress
            type:Organization
            name:Anhui Medical University
            address:
               name:Basic Medical School, Anhui Medical University, Anhui, China
               type:PostalAddress
            type:Organization
      name:Xiao Li
      affiliation:
            name:Beijing Institute of Lifeomics
            address:
               name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
               type:PostalAddress
            type:Organization
      name:Heyi Zheng
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Zhihong Wu
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      name:Yunping Zhu
      url:http://orcid.org/0000-0002-7320-7411
      affiliation:
            name:Beijing Institute of Lifeomics
            address:
               name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
               type:PostalAddress
            type:Organization
            name:Anhui Medical University
            address:
               name:Basic Medical School, Anhui Medical University, Anhui, China
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Ling Leng
      url:http://orcid.org/0000-0002-6519-012X
      affiliation:
            name:Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
            address:
               name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
      name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
      name:Basic Medical School, Anhui Medical University, Anhui, China
      name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
      name:Department of Dermatology and Venereology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
      name:State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China
      name:Basic Medical School, Anhui Medical University, Anhui, China
      name:Stem Cell and Regenerative Medicine Lab, State Key Laboratory of Complex Severe and Rare Diseases, Translational Medicine Center, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China

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