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Keywords {🔍}

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Topics {✒️}

hplc-coupled mass spectrometry trna-mediated codon-biased translation high-resolution mass spectrometry n4-acetyl-2’-o-methylcytidine s2c 2-methylthio-n6-cis-hydroxyisopentenyladenosine m1a high-resolution mass spectrometer bmc plant biol d-h2o fragments 2-methylthio-cis-zeatin riboside methyl tert-butyl ether chimeric autophagy-tethering compounds urea-page analysis full size image hplc-grade organic reagents nucleus-encoded transfer rnas n6-cis-hydroxyisopentenyladenosine ms2i6a user-friendly online tool maldi mass spectrometry 5-carboxymethylaminomethyl-2’-o-methyluridine ncm5u 2-methylthio-n6-methyladenosine t6a electronic supplementary material trna-modifying enzyme genes productive oil-bearing crop 2-methylthio-n6-threonylcarbamoyladenosine ar post-transcriptional rna modifications 10% urea-page co2-sensitive trna modification 2-methylthio-n6-isopentenyladenosine ms2io6a chromosome-level reference genome urea-polyacrylamide gel electrophoresis widely accepted notion privacy choices/manage cookies state privacy rights rice ostrm13 adds identifying unique fragments mass spectrometry comprehensive mapping reveals mass accuracy finer modified rna fragments supplementary material exact mass precisely modifying enzyme genes unique perspective investigated obtain permission directly gene comparison techniques carbon chain lengths improving plant traits longer carbon chains short sequence repeats salt tolerance

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         description:The oil palm (Elaeis guineensis) is a crucial agricultural commodity, yielding the highest oil output among oil-bearing crops. Despite its significance, productivity challenges persist due to genetic and environmental factors. This study breaks new ground by mapping tRNA modifications in oil palm, exploring their roles during fruit ripening, an area not extensively studied in non-model crops. Utilizing advanced RNA mass spectrometry techniques, we identified 48 distinct tRNA modifications across 88 sites, alongside 164 genes associated with tRNA modifying enzymes. This comprehensive mapping reveals the decreasing nature of most tRNA modifications during fruit development, except for adenosine 2’-O methylation (Am). It hints at a gradual weakening of protein translation quality control and highlights a unique role for Am during fruit ripening. Additionally, lipidomic analysis tracked 674 lipids in oil palm fruits, indicating a correlation between tRNA modifications and the accumulation of specific lipids. This study mapped tRNA modifications in oil palm for the first time and showed the diversity of dynamic changes in tRNA modifications as the fruits develop.
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      headline:Unveiling transfer RNA modifications of oil palm and their dynamic changes during fruit ripening
      description:The oil palm (Elaeis guineensis) is a crucial agricultural commodity, yielding the highest oil output among oil-bearing crops. Despite its significance, productivity challenges persist due to genetic and environmental factors. This study breaks new ground by mapping tRNA modifications in oil palm, exploring their roles during fruit ripening, an area not extensively studied in non-model crops. Utilizing advanced RNA mass spectrometry techniques, we identified 48 distinct tRNA modifications across 88 sites, alongside 164 genes associated with tRNA modifying enzymes. This comprehensive mapping reveals the decreasing nature of most tRNA modifications during fruit development, except for adenosine 2’-O methylation (Am). It hints at a gradual weakening of protein translation quality control and highlights a unique role for Am during fruit ripening. Additionally, lipidomic analysis tracked 674 lipids in oil palm fruits, indicating a correlation between tRNA modifications and the accumulation of specific lipids. This study mapped tRNA modifications in oil palm for the first time and showed the diversity of dynamic changes in tRNA modifications as the fruits develop.
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      dateModified:2025-03-29T00:00:00Z
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