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Title[redir]:
tRNAscan-SE: Searching for tRNA genes in genomic sequences - PMC
Description:
Transfer RNAs are the largest, most complex non-coding RNA family, universal to all living organisms. tRNAscan-SE has been the de facto tool for predicting tRNA genes in whole genomes. The newly developed version 2.0 has incorporated advanced ...
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Keywords {🔍}
file, trna, genes, search, trnascanse, option, score, fig, sequences, predicted, output, version, trnas, options, results, default, gene, isotype, pmc, model, doi, genomes, models, secondary, prediction, predictions, sequence, pubmed, google, scholar, online, software, structure, query, rna, covariance, include, infernal, format, result, article, mitochondrial, mode, tool, source, eukaryotic, note, scores, free, standalone,
Topics {✒️}
user-friendly web-based version unix-based computing environments unix command-line version trnascan-se web server retrotransposon-driven repetitive elements methods mol biol trna-derived sine families trna-ala anticodon mutations standalone unix-based software original trnascan-se v1 short interspersed elements isotype-specific model scan trnascan-se package includes pmc beta search anticodon-expected isotype model trnascan-se gene predictions include high-scoring pseudogenes inconsistent isotype/anticodon prediction unix command-driven command line tools trnascan-se online version default trnascan-se output shares computing resources trnascan-se configuration file unix-based commands publisher site pdf command-driven versions online web versions additional covariance models �high confidence” set �high confidence set” updated models based identify trna genes nuclear codon reassignments alternative genetic codes isotype-specific model activate additional classification high-scoring categories trna training data 20+ isotype-specific models isotype-specific models trnascan-se v1 trna-derived sequences additional output formats full linear sequence additional classification information incorporated advanced methodologies predicting transfer rna expected genetic code trnascan-se package
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