
DOI . ORG {
}
Title[redir]:
Bioconductor - imcdatasets
Description:
The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.
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Keywords {🔍}
package, bioconductor, version, packages, imcdatasets, datasets, imc, release, images, cell, source, publicly, single, data, object, damond, orcid, enter, install, license, reports, binary, learn, developers, started, collection, imaging, mass, cytometry, access, tissue, extract, singlecellexperiment, cytoimagelist, nicolas, ctb, httpsbioconductororgpackagesimcdatasets, installation, start, documentation, system, html, script, guidelines, text, details, experimenthub, url, macos, repository,
Topics {✒️}
org/packages/imcdatasets source repository /bodenmillergroup/imcdatasets bug reports joint galaxy/bioconductor conference script contributing guidelines bioconductor release source package org/packages/imcdatasets source repository release bioconductor support site single cell data /bodenmillergroup/imcdatasets/issues imaging mass cytometry script reference manual imcdatasets package gz windows binary datasets typically consist git clone https package installed nicolas damond [aut details biocviews hdf5array system requirements package version 1 accessing imc datasets started install generated images multichannel images packages package cre] orcid cell masks //bioconductor bioconductor macos binary images datasets format registration open enables measurement tissue sections cytoimagelist object quietly = true older versions pdf news cytomapper imports download stats released version devel version tissue version text license imc datasets
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