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Keywords {🔍}

ago, days, views, votes, replies, updated, written, weeks, deseq, reply, vote, bioconductor, question, michael, love, limma, hours, error, ensembl, analysis, james, macdonald, years, file, design, job, comment, users, gordon, smyth, experimenthub, shepherl, rnaseq, diffbind, version, popular, latest, kegg, applying, lmfit, ebayes, toptable, modeling, associations, expression, edger, full, metadata, normalization, carolinezanchi,

Topics {✒️}

experimenthub full metadata 6k views pre-filtering 4k views rna-seq illuminahumanmethylationmsamanifest getqc hcg110 0k views news chip-seq data analysis 9k views error 9k views analysis ai-assisted tools recently minfi latest update deseq2 design formula 1k views interaction provide updated manifests nmr-derived metabolic measures 7k views parameters 8k views compute_fasta_digest 5k views heatmap 8 hours ago 4k views gtf file applying lmfit 8k views latest genome build limma-voom design matrix 5k views epic v2 chip 2 years ago 9 years ago 1 years ago 6 years ago 3k views compare deseq2 adjusting independent filtering zebrafish genome lab head positions analyse dna sequence basic regression model epic v2 array site constitutes acceptance replies comment logfc values compare popular question � votes blocks cross condition [limma user' bam file gene expression 1510 users visited creation

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• > How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()?
• Deseq2 paired sample in the design is considered as "batch"?
• How can I correctly use phyloseq with Docker?
• Is voomByGroup available in limma?
• Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2?
• Which GTF file to use for creation of tx2gene files?
• Limma duplicateCorrelation appropriate where some blocks cross condition and some are in same condition?

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