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We are analyzing https://www.nature.com/articles/s41467-018-06405-9.

Title:
RNA editing derived epitopes function as cancer antigens to elicit immune responses | Nature Communications
Description:
In addition to genomic mutations, RNA editing is another major mechanism creating sequence variations in proteins by introducing nucleotide changes in mRNA sequences. Deregulated RNA editing contributes to different types of human diseases, including cancers. Here we report that peptides generated as a consequence of RNA editing are indeed naturally presented by human leukocyte antigen (HLA) molecules. We provide evidence that effector CD8+ T cells specific for edited peptides derived from cyclin I are present in human tumours and attack tumour cells that are presenting these epitopes. We show that subpopulations of cancer patients have increased peptide levels and that levels of edited RNA correlate with peptide copy numbers. These findings demonstrate that RNA editing extends the classes of HLA presented self-antigens and that these antigens can be recognised by the immune system. RNA editing is a biological process that creates sequence variation. Here the authors show that peptides generated as a consequence of RNA editing are naturally presented by human leukocyte antigen (HLA) and serve as antigens to elicit anti-tumour immune responses.
Website Age:
30 years and 10 months (reg. 1994-08-11).

Matching Content Categories {📚}

  • Science
  • Education
  • Photography

Content Management System {📝}

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Custom-built

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🌆 Monumental Traffic: 20M - 50M visitors per month


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The website utilizes display ads within its content to generate revenue. Check the next section for further revenue estimates.

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$531,700 per month
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Keywords {🔍}

peptide, peptides, article, edited, cells, editing, rna, ccni, google, scholar, tumour, cancer, cell, adar, cas, data, hla, samples, ccnied, human, mrna, fig, tils, melanoma, analysis, mel, nature, til, supplementary, performed, tissue, derived, levels, killing, sequencing, ted, normal, expression, based, target, number, mass, level, lines, dna, tcell, sample, correlation, protein, quantitation,

Topics {✒️}

nature portfolio privacy policy anti-ctla4/anti-pd1 antibodies3 advertising psih-h1-gfp-shadar1 dna psih-h1-gfp empty vector clinical development secore® sequencing kits china medical university shared nature reprints antigen-specific t-cell activation data availability cell-mediated caspase-3 cleavage nature 550 nature 515 nature 502 nature 351 nature large-scale protein identifications ccni-ed10 peptide-reacting til2661 cell-induced caspase-3 cleavage references pardoll single-dose cyclophosphamide associates tumor-infiltrating lymphocyte cultures cell-mediated cell killing complete tumour media higher-energy collisional dissociation original author bacteria-derived hla-bound peptides spectral library approach rna-edited hla-bound peptide house-keeping gene gapdh org/index detect t-cell responses complete til media c13/n15-labelled leucine targeted lc-ms strategy high-throughput sequencing data stimulate t-cell responses manipulating t-cell activation generated ccni-ed10-specific effector high-capacity cdna kit flow cytometry-based method pipeline combining rna-seq ms-based immunopeptidomics showing found t-cell populations lc-ms experiments relies rna editing—immune protector ranking-based scoring function

Questions {❓}

  • Is it possible to develop cancer vaccines to neoantigens, what are the major challenges, and how can these be overcome?

Schema {🗺️}

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         headline:RNA editing derived epitopes function as cancer antigens to elicit immune responses
         description:In addition to genomic mutations, RNA editing is another major mechanism creating sequence variations in proteins by introducing nucleotide changes in mRNA sequences. Deregulated RNA editing contributes to different types of human diseases, including cancers. Here we report that peptides generated as a consequence of RNA editing are indeed naturally presented by human leukocyte antigen (HLA) molecules. We provide evidence that effector CD8+ T cells specific for edited peptides derived from cyclin I are present in human tumours and attack tumour cells that are presenting these epitopes. We show that subpopulations of cancer patients have increased peptide levels and that levels of edited RNA correlate with peptide copy numbers. These findings demonstrate that RNA editing extends the classes of HLA presented self-antigens and that these antigens can be recognised by the immune system. RNA editing is a biological process that creates sequence variation. Here the authors show that peptides generated as a consequence of RNA editing are naturally presented by human leukocyte antigen (HLA) and serve as antigens to elicit anti-tumour immune responses.
         datePublished:2018-09-25T00:00:00Z
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      headline:RNA editing derived epitopes function as cancer antigens to elicit immune responses
      description:In addition to genomic mutations, RNA editing is another major mechanism creating sequence variations in proteins by introducing nucleotide changes in mRNA sequences. Deregulated RNA editing contributes to different types of human diseases, including cancers. Here we report that peptides generated as a consequence of RNA editing are indeed naturally presented by human leukocyte antigen (HLA) molecules. We provide evidence that effector CD8+ T cells specific for edited peptides derived from cyclin I are present in human tumours and attack tumour cells that are presenting these epitopes. We show that subpopulations of cancer patients have increased peptide levels and that levels of edited RNA correlate with peptide copy numbers. These findings demonstrate that RNA editing extends the classes of HLA presented self-antigens and that these antigens can be recognised by the immune system. RNA editing is a biological process that creates sequence variation. Here the authors show that peptides generated as a consequence of RNA editing are naturally presented by human leukocyte antigen (HLA) and serve as antigens to elicit anti-tumour immune responses.
      datePublished:2018-09-25T00:00:00Z
      dateModified:2018-09-25T00:00:00Z
      pageStart:1
      pageEnd:10
      license:http://creativecommons.org/licenses/by/4.0/
      sameAs:https://doi.org/10.1038/s41467-018-06405-9
      keywords:
         Antigen processing and presentation
         Cancer immunotherapy
         Tumour immunology
         Science
         Humanities and Social Sciences
         multidisciplinary
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