BIOCONDUCTOR . ORG {
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Title:
Bioconductor - gdsfmt
Description:
Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to read a GDS file in parallel with multiple R processes supported by the package parallel.
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Keywords {🔍}
package, bioconductor, data, packages, version, gdsfmt, gds, release, zheng, ctb, source, structure, gogarten, included, sources, enter, install, reports, binary, learn, developers, started, software, interface, corearray, genomic, files, multiple, efficient, bits, snp, access, parallel, xiuwen, levine, laurie, weir, highperformance, bioinformatics, format, installation, start, documentation, system, details, bioc, url, macos, gdsfmttgz, repository,
Topics {✒️}
org/packages/gdsfmt source repository /zhengxwen/gdsfmt bug reports high-performance computing toolset joint galaxy/bioconductor conference bioconductor release tgz source repository source package gdsfmt package offers release efficient random access //code bioconductor support site /zhengxwen/gdsfmt/issues large-scale datasets single-nucleotide polymorphism jean-loup gailly mark adler [ctb] included zlib sources yann collet [ctb] included lz4 sources xz contributors [ctb] included liblzma sources principal component analysis wgs variant calls script reference manual gz windows binary zip macos binary tgz macos binary random-access memory package installed git clone https occupies fewer bits xiuwen zheng [aut details biocviews stephanie gogarten [ctb] package parallel packages started install package high-level data files data compression gds format hierarchical structure snp data software version bioconductor //bioconductor developer access org
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