
CRAN . RSTUDIO . COM {
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Title:
CRAN: Package snplinkage
Description:
Linkage disequilibrium visualizations of up to several hundreds of single nucleotide polymorphisms (SNPs), annotated with chromosomic positions and gene names. Two types of plots are available for small numbers of SNPs (<40) and for large numbers (tested up to 500). Both can be extended by combining other ggplots, e.g. association studies results, and functions enable to directly visualize the effect of SNP selection methods, as minor allele frequency filtering and TagSNP selection, with a second correlation heatmap. The SNPs correlations are computed on Genotype Data objects from the
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Keywords {🔍}
snps, package, charlon, aut, snplinkagetgz, snplinkage, linkage, disequilibrium, visualizations, results, data, source, snplinkagezip, rrelease, roldrel, single, nucleotide, polymorphisms, annotated, plots, numbers, snp, selection, methods, objects, gwastools, snprelate, ggplot, gtable, biomart, thomas, code, binaries, arm, hundreds, chromosomic, positions, gene, names, types, small, large, tested, extended, combining, ggplots, association, studies, functions, enable,
Topics {✒️}
single nucleotide polymorphisms /thomaschln/snplinkage/-/issues license karl forner [aut] 13097/archive-ouverte/unige /thomaschln/snplinkage needscompilation gz windows binaries snplinkage archive linking association studies results snp selection methods snplinkage results documentation news cran checks zip macos binaries canonical form https org/package=snplinkage genotype data objects tagsnp selection snplinkage author chromosomic positions gene names small numbers large numbers functions enable directly visualize correlation heatmap 'gtable' objects utils suggests testthat published gpl-3 url reference manual pdf vignettes r-devel r-release r-oldrel r-project data formats 'gwastools' package 'snprelate' package customizable 'ggplot2' 'biomart' package package source snps correlations snplinkage charlon results methods package data 32614/cran https zip
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