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er-negative/her2-normal ibc compared cdna microarray analysis er-positive/her2-normal ibc month download article/chapter stage-matched case–control study gene-expression profiling study er-positive/her2-normal er-negative/her2-normal her2-positive breast cancer mab-mediated cancer immunotherapy gene expression profiling gene set analysis cancer staging system lipid metabolism-related pathways gene expression analysis human breast cancer immune system-related pathways gene set enrichment dna-damaged induced apoptosis inflammatory breast cancers her2-overexpressing relapsed breast cancer based inflammatory breast cancer inflammatory breast cancer full article pdf commonwealth cancer foundation her2-targeted therapy oestrogen-receptor status privacy choices/manage cookies compared expression data breast medical oncology fredika robertson hormone receptor american joint committee van den eynden primary systemic therapy breast tumor heterogeneity distinct molecular signature molecular cytogenetic analysis rapamycin kinase inhibitor rapamycin inhibitor deforolimus knowledge-based approach van der auwera distinct clinical subtypes article iwamoto expanded her2+ cohort phase ii study lajos pusztai & naoto texas grant european economic area

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         headline:Different gene expressions are associated with the different molecular subtypes of inflammatory breast cancer
         description:The goal of this study was to determine whether gene expression differences exist between inflammatory breast cancers (IBC) and T stage-matched non-IBC patients stratified by hormone receptor and HER2 status. We used Affymetrix GeneChips to analyze 82 tumor samples (25 T4d patients, and 57 T4a-c patients) of newly diagnosed breast cancers. Genes that were differentially expressed between the IBC and non-IBC specimens were identified using the t test, and differential expression of gene sets was assessed using gene set analysis. Three distinct clinical subtypes of IBC and non-IBC were compared: ER-positive/HER2-normal, HER2-amplified, and ER-negative/HER2-normal. When we compared expression data from all IBC with all non-IBC, we found no significant differences after adjusting for multiple testing. When IBC and non-IBC tumors were compared by clinical subtype, however, significant differences emerged. Complement and immune system-related pathways were overexpressed in ER-positive/HER2-normal IBC. Protein translation and mTOR signaling were overexpressed in HER2-amplified IBC. Apoptosis-, neural-, and lipid metabolism-related pathways were overexpressed in ER-negative/HER2-normal IBC compared with non-IBC of the same receptor phenotype. In this T stage-matched case–control study, the survival curves of patients with IBC and non-IBC were similar for all three clinical subtypes. IBC tumors can be divided into molecular and clinical subtypes similar to those of non-IBC. Clinical subtypes of IBC show molecular differences compared with similar subtypes of non-IBC.
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               type:PostalAddress
            type:Organization
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Yuan Qi
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Massimo Cristofanilli
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Anthony Lucci
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Wendy A. Woodward
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Radiation Oncology Treatment, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:James M. Reuben
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Junji Matsuoka
      affiliation:
            name:Okayama University
            address:
               name:Department of Gastroenterological Surgery and Surgical Oncology, Okayama University, Okayama, Japan
               type:PostalAddress
            type:Organization
      name:Yun Gong
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Savitri Krishnamurthy
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Vicente Valero
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Gabriel N. Hortobagyi
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Fredika Robertson
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:W. Fraser Symmans
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      name:Lajos Pusztai
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Naoto T. Ueno
      affiliation:
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
            name:The University of Texas MD Anderson Cancer Center
            address:
               name:Stem Cell Transplantation/Cellular Therapy Oncology, The University of Texas MD Anderson Cancer Center, Houston, USA
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Gastroenterological Surgery and Surgical Oncology, Okayama University, Okayama, Japan
      name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Radiation Oncology Treatment, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Hematopathology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Gastroenterological Surgery and Surgical Oncology, Okayama University, Okayama, Japan
      name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Pathology, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Breast Cancer Translational Research Laboratory, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Department of Breast Medical Oncology, Unit 1354, The University of Texas MD Anderson Cancer Center, Houston, USA
      name:Stem Cell Transplantation/Cellular Therapy Oncology, The University of Texas MD Anderson Cancer Center, Houston, USA
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