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We are analyzing https://academic.oup.com/bioinformatics/article/27/21/2957/217265/bioinformatics.

Title:
FLASH: fast length adjustment of short reads to improve genome assemblies | Bioinformatics | Oxford Academic
Description:
Abstract. Motivation: Next-generation sequencing technologies generate very large numbers of short reads. Even with very deep genome coverage, short read l
Website Age:
27 years and 4 months (reg. 1998-02-23).

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Keywords {🔍}

reads, flash, overlap, read, length, pairs, assembly, fragment, genome, merged, pairedend, number, correctly, error, correct, size, data, shows, short, shera, human, assemblies, library, overlapping, merging, table, merge, results, contigs, ratio, open, shown, lengths, fragments, mismatch, incorrect, contig, simulated, figure, fig, sequencing, shorter, rate, total, oxford, errors, quality, pair, original, region,

Topics {✒️}

oxford university press oxford academic bioinformatics mathematics books journals signature search ccrr university press partners google scholar latest dose-response transcriptomic analysis including rna-seq data fast computational tool combines paired-end reads illumina paired-end sequencing generate paired-end reads paired-end sequence data article sign resulting paired-end reads merging paired-end reads volume 27 november 2011 1 introduction enhancing variant interpretation overlapping paired-end reads paired-end reads overlapping high-quality draft assemblies low-quality overlapping reads maryland view access accessibility contact flash-assisted assembly contained marketing citing articles paired-end libraries min-olap bases overlap cited dose-l1000 illumina sequencing platforms illumina sequencing technology generation sequencing technologies default settings contig n50 size current illumina sequencers total contig size rapidly dropping cost heuristic scoring function single threaded mode sra accession srx007714 k-mer size interactive shiny application target-centric exploration user-friendly platform york dermatologists warrnambool paired-end reads paired-end library dna sequencing technologies

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ScholarlyArticle:
      context:https://schema.org
      id:https://academic.oup.com/bioinformatics/article/27/21/2957/217265
      name:FLASH: fast length adjustment of short reads to improve genome assemblies
      datePublished:2011-09-07
      isPartOf:
         id:https://academic.oup.com/bioinformatics/issue/27/21
         type:PublicationIssue
         issueNumber:21
         datePublished:2011-11-01
         isPartOf:
            id:https://academic.oup.com/bioinformatics/bioinformatics
            type:Periodical
            name:Bioinformatics
            issn:
               1367-4811
      url:https://dx.doi.org/10.1093/bioinformatics/btr507
      inLanguage:en
      copyrightHolder:Oxford University Press
      copyrightYear:2025
      publisher:Oxford University Press
      author:
            name:Magoč, Tanja
            affiliation:McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
            type:Person
            name:Salzberg, Steven L.
            affiliation:McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
            type:Person
      description:Abstract. Motivation: Next-generation sequencing technologies generate very large numbers of short reads. Even with very deep genome coverage, short read l
      pageStart:2957
      pageEnd:2963
      siteName:OUP Academic
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      headline:FLASH: fast length adjustment of short reads to improve genome assemblies
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      image:alt:Distribution of fragment lengths. The horizontal axis shows the fragment length, and the vertical axis shows the number of fragments of a given length. (a) Staphylococcus aureus. (b) Human chromosome 14.
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      issueNumber:21
      datePublished:2011-11-01
      isPartOf:
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         type:Periodical
         name:Bioinformatics
         issn:
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Periodical:
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      name:Bioinformatics
      issn:
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Person:
      name:Magoč, Tanja
      affiliation:McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
      name:Salzberg, Steven L.
      affiliation:McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA

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