
YANAILAB . GITHUB . IO {
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Title:
Launch pipeline - Manual for celseq2
Description:
User manual for celseq2, a Python framework for processing CEL-Seq2 data
Website Age:
12 years and 3 months (reg. 2013-03-08).
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Website use mkdocs-0.17.2, mkdocs-material-2.6.0.
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Keywords {π}
pipeline, celseq, launch, run, tasks, dryrun, parallel, user, table, management, submit, configfile, pathtowonderfulcelseqconfigyaml, experimenttable, pathtowonderfulexperimenttabletxt, outputdir, pathtoresultdir, jobs, home, manual, experiment, storage, server, set, file, computing, cluster, mkdocs, skip, content, type, start, searching, yanailabcelseq, guide, setup, configuration, faq, contents, learn, easy, ways, users, design, reflects, philosophy, effort, realize, superb, experience,
Topics {βοΈ}
celseq2 --config-file /path/ sam alignment file york university powered yanailab/celseq2 manual experiment table launch pipeline content home faq table fastq file scheduled tasks 10 tasks executed serverΒΆ alternatively submit jobs pipeline reflects start searching ways users counting umi /wonderful_cel-seq2_config computing node submitting jobs computing nodes submits 10 jobs memory requested qsub -cwd user h_vmem=50g launch celseq2 run pipeline parallel manual 50g skip easy design philosophy effort examine performed executing task aligning /wonderful_experiment_table computer straightforward cluster built top snakemake
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