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Title:
heatmap.2 function - RDocumentation
Description:
<p>A heat map is a false color image (basically <code><a rd-options="" href="/link/image?package=gplots&version=3.0.3" data-mini-rdoc="gplots::image">image</a>(t(x))</code>) with a dendrogram added to the left side and/or to the top. Typically, reordering of the rows and columns according to some set of values (row or column means) within the restrictions imposed by the dendrogram is carried out.</p> <p>This heatmap provides a number of extensions to the standard R <code><a rd-options="stats" href="/link/heatmap?package=gplots&version=3.0.3&to=stats" data-mini-rdoc="stats::heatmap">heatmap</a></code> function.</p>
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heatmapx, srtcol, data, adjcol, offsetrow, offsetcol, run, dendrogram, color, srtrow, reordering, show, row, plotted, scalecolumn, effect, rowvfalse, plot, key, marginc, symmtrue, tracenone, column, col, dendrogramboth, generates, warning, reorder, breaksfullbreaks, adjrowc, adjcolc, breaks, zscore, values, pms, examples, code, start, end, default, full, heatmap, colvfullcoldendrogram, subset, rowvfullrowdendrogram, keytitlena, keyxlabna, keyparlistmgpc, marc, keyxtickfunfunction,
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white hv$colortable[hv$colortable[ hv$colortable[hv$colortable[ description usage arguments z-score scaling z-score values colv=full$coldendrogram[[2]] rowv=full$rowdendrogram[[1]] original data values breaks=full$breaks dendrogram plotted side=side line=line colv=false color coding lmat=lmat examples run colsidecolors=cc hv rowv=false rowv=null lmat=rbind col=col color key col=bluered col=cm col=topo col=rev col=redgreen rdocumentation powered programming gplots branch means reorderfun=function mpg ~ hp title=na xtickfun=function breaks[length tick=false rowsidecolors=rc specification variables car models match rowsidecolors colrow=rc colcol=cc exp' argument symm=true variable clustering distance based distfun=function relative concentration sums heatmap
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