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figure legends nature portfolio integrated hplc/esi-ms/ms system privacy policy supplementary information files advertising crispr/cas9-mediated gene disruptions ung-backup uracil-excision activities thermo scientific 5hmdc-induced γ-h2ax foci universidad de sevilla maría josé peña-gómez supplementary fig reprints goat anti-rat alexa-488 nature nature 1993 nuclear γ-h2ax foci hplc-ms/ms quantitation fancd2− crispr-cas9 knocked article peña-gómez streptavidin-magnetic sepharose beads van rossum-fikkert se γ-h2ax foci formation mouse anti-brdu antibody replication fork-structured dna prevents double-strand breaks accumulate single-stranded dna rat anti-brdu antibody functional fa/brca pathway deamination product 5-hydroxymethyl-2’-deoxyuridine social media fresh media cell line-dependent manner dna repair-deficient fancc hplc-ms/ms cytosine-5-methyltransferases add aldehydes central line represents 5hmdc-mediated fork impairment olaparib dose-dependent death transcription-replication conflicts permissions 5hmdc-mediated dna damage dot plot representing trapped parp1-replication conflicts replication fork stability 5hmdc-derived 5hmdu accumulates fbh1-dependent rad51 regulation regulates gene transcription cell death dis

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• Why does the bone marrow fail in Fanconi anemia?

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         description:Fanconi anemia (FA) is a rare hereditary disorder caused by mutations in any one of the FANC genes. FA cells are mainly characterized by extreme hypersensitivity to interstrand crosslink (ICL) agents. Additionally, the FA proteins play a crucial role in concert with homologous recombination (HR) factors to protect stalled replication forks. Here, we report that the 5-methyl-2’-deoxycytidine (5mdC) demethylation (pathway) intermediate 5-hydroxymethyl-2’-deoxycytidine (5hmdC) and its deamination product 5-hydroxymethyl-2’-deoxyuridine (5hmdU) elicit a DNA damage response, chromosome aberrations, replication fork impairment and cell viability loss in the absence of FANCD2. Interestingly, replication fork instability by 5hmdC or 5hmdU was associated to the presence of Poly(ADP-ribose) polymerase 1 (PARP1) on chromatin, being both phenotypes exacerbated by olaparib treatment. Remarkably, Parp1−/− cells did not show any replication fork defects or sensitivity to 5hmdC or 5hmdU, suggesting that retained PARP1 at base excision repair (BER) intermediates accounts for the observed replication fork defects upon 5hmdC or 5hmdU incorporation in the absence of FANCD2. We therefore conclude that 5hmdC is deaminated in vivo to 5hmdU, whose fixation by PARP1 during BER, hinders replication fork progression and contributes to genomic instability in FA cells.
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      headline:FANCD2 maintains replication fork stability during misincorporation of the DNA demethylation products 5-hydroxymethyl-2’-deoxycytidine and 5-hydroxymethyl-2’-deoxyuridine
      description:Fanconi anemia (FA) is a rare hereditary disorder caused by mutations in any one of the FANC genes. FA cells are mainly characterized by extreme hypersensitivity to interstrand crosslink (ICL) agents. Additionally, the FA proteins play a crucial role in concert with homologous recombination (HR) factors to protect stalled replication forks. Here, we report that the 5-methyl-2’-deoxycytidine (5mdC) demethylation (pathway) intermediate 5-hydroxymethyl-2’-deoxycytidine (5hmdC) and its deamination product 5-hydroxymethyl-2’-deoxyuridine (5hmdU) elicit a DNA damage response, chromosome aberrations, replication fork impairment and cell viability loss in the absence of FANCD2. Interestingly, replication fork instability by 5hmdC or 5hmdU was associated to the presence of Poly(ADP-ribose) polymerase 1 (PARP1) on chromatin, being both phenotypes exacerbated by olaparib treatment. Remarkably, Parp1−/− cells did not show any replication fork defects or sensitivity to 5hmdC or 5hmdU, suggesting that retained PARP1 at base excision repair (BER) intermediates accounts for the observed replication fork defects upon 5hmdC or 5hmdU incorporation in the absence of FANCD2. We therefore conclude that 5hmdC is deaminated in vivo to 5hmdU, whose fixation by PARP1 during BER, hinders replication fork progression and contributes to genomic instability in FA cells.
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