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We are analyzing https://www.nature.com/articles/ncomms6320.

Title:
Genome-wide association study of Arabidopsis thaliana leaf microbial community | Nature Communications
Description:
Identifying the factors that influence the outcome of host–microbial interactions is critical to protecting biodiversity, minimizing agricultural losses and improving human health. A few genes that determine symbiosis or resistance to infectious disease have been identified in model species, but a comprehensive examination of how a host genotype influences the structure of its microbial community is lacking. Here we report the results of a field experiment with the model plant Arabidopsis thaliana to identify the fungi and bacteria that colonize its leaves and the host loci that influence the microbe numbers. The composition of this community differs among accessions of A. thaliana. Genome-wide association studies (GWAS) suggest that plant loci responsible for defense and cell wall integrity affect variation in this community. Furthermore, species richness in the bacterial community is shaped by host genetic variation, notably at loci that also influence the reproduction of viruses, trichome branching and morphogenesis. The effect of a host
Website Age:
30 years and 10 months (reg. 1994-08-11).

Matching Content Categories {📚}

  • Science
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Custom-built

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🌆 Monumental Traffic: 20M - 50M visitors per month


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How Much Does Nature.com Make? {💰}


Display Ads {🎯}

$536,300 per month
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Keywords {🔍}

article, community, google, scholar, bacterial, cas, gwas, microbial, thaliana, species, plant, fungal, communities, otus, nature, host, results, leaf, genomewide, association, arabidopsis, gene, samples, number, bacteria, supplementary, data, variation, sequencing, ads, cell, table, top, fungi, genetic, analyses, diversity, dna, reads, genes, accessions, sample, sequenced, cca, structure, field, loci, studies, methods, fig,

Topics {✒️}

nature portfolio southwest michigan research permissions reprints privacy policy genome-wide single-nucleotide polymorphism java-based tools amplicon library preparation advertising org/home/tair/ontologies/gene_ontology/ genome-wide association study social media development team genome-wide association studies language author information authors nature 488 nature 465 nature 440 nature nature 464 full access author correspondence drop-size soda lakes european nucleotide archive multi-dimensional ordination space salt-secreting desert tree recommended freeze-thaw method assess genome-wide significance genome-wide patterns distinct microtubule-related categories barcoded libraries geo-climatic factors shape genome-wide survey fungal-specific primer its1 permissions maize rhizosphere microbiome genome-wide type fungus-specific its1f pectin-related enzymes include accession code prjeb7247 host-genetic factors play genotype-dependent microbial effects 12-bp error-correcting barcode46 earlier pca-based approaches55 host-genetic variation shapes arabidopsis natural variation poorly characterized/sequenced taxa european economic area efficient mixed models microbe-microbe interactions influence

Questions {❓}

  • Out of the rivers: are some aquatic hyphomycetes plant endophytes?

Schema {🗺️}

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