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We are analyzing https://www.nature.com/articles/ncomms13316.

Title:
De novo genic mutations among a Chinese autism spectrum disorder cohort | Nature Communications
Description:
Recurrent de novo (DN) and likely gene-disruptive (LGD) mutations contribute significantly to autism spectrum disorders (ASDs) but have been primarily investigated in European cohorts. Here, we sequence 189 risk genes in 1,543 Chinese ASD probands (1,045 from trios). We report an 11-fold increase in the odds of DN LGD mutations compared with expectation under an exome-wide neutral model of mutation. In aggregate, ∼4% of ASD patients carry a DN mutation in one of just 29 autism risk genes. The most prevalent gene for recurrent DN mutations is SCN2A (1.1% of patients) followed by CHD8, DSCAM, MECP2, POGZ, WDFY3 and ASH1L. We identify novel DN LGD recurrences (GIGYF2, MYT1L, CUL3, DOCK8 and ZNF292) and DN mutations in previous ASD candidates (ARHGAP32, NCOR1, PHIP, STXBP1, CDKL5 and SHANK1). Phenotypic follow-up confirms potential subtypes and highlights how large global cohorts might be leveraged to prove the pathogenic significance of individually rare mutations. Recurrent sporadic mutations are important risk factors for autism spectrum disorders (ASDs) but have been primarily investigated in European cohorts. Here, Eichler, Xia and colleagues analyse risk genes in a large Chinese ASD cohort and find novel recurrences of potential pathogenic significance.
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Keywords {🔍}

mutations, genes, lgd, pubmed, autism, article, data, supplementary, asd, google, scholar, mutation, cas, patients, identified, sequencing, central, nature, study, risk, missense, scna, spectrum, china, acgc, gene, ssc, chinese, exome, table, studies, candidate, variants, cohort, cohorts, novo, mips, samples, chd, rare, events, individuals, number, probands, families, disorder, genetic, previously, total, analysis,

Topics {✒️}

nature portfolio privacy policy medical information research editing neural-crest cell-derived organs advertising scientific advisory board autism-related single-gene disorders social media fundamental research funds 0/ reprints development behavior center autism research primary single-nucleotide variation late-onset episodic ataxia additional information 215/mcp/index index barcode nature 485 nature 515 nature 501 nature 519 nature 499 nature sun yat-sen university dn single-nucleotide variants supplementary references public download 101 bp paired-end reads neuropsychiatric disease-free individuals multiple libraries methods human subjects transmitted copy-number variation exome-wide neutral model references lai o'roak research central south university child healthcare hospital pervasive developmental disorders published mip-based studies identifying additional mutations autism spectrum disorders rare de novo noted specific comorbidities mip-sequenced asd cohorts barcoded libraries de novo mutations honghui li state key laboratory

Schema {🗺️}

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      headline:De novo genic mutations among a Chinese autism spectrum disorder cohort
      description:Recurrent de novo (DN) and likely gene-disruptive (LGD) mutations contribute significantly to autism spectrum disorders (ASDs) but have been primarily investigated in European cohorts. Here, we sequence 189 risk genes in 1,543 Chinese ASD probands (1,045 from trios). We report an 11-fold increase in the odds of DN LGD mutations compared with expectation under an exome-wide neutral model of mutation. In aggregate, ∼4% of ASD patients carry a DN mutation in one of just 29 autism risk genes. The most prevalent gene for recurrent DN mutations is SCN2A (1.1% of patients) followed by CHD8, DSCAM, MECP2, POGZ, WDFY3 and ASH1L. We identify novel DN LGD recurrences (GIGYF2, MYT1L, CUL3, DOCK8 and ZNF292) and DN mutations in previous ASD candidates (ARHGAP32, NCOR1, PHIP, STXBP1, CDKL5 and SHANK1). Phenotypic follow-up confirms potential subtypes and highlights how large global cohorts might be leveraged to prove the pathogenic significance of individually rare mutations. Recurrent sporadic mutations are important risk factors for autism spectrum disorders (ASDs) but have been primarily investigated in European cohorts. Here, Eichler, Xia and colleagues analyse risk genes in a large Chinese ASD cohort and find novel recurrences of potential pathogenic significance.
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      name:Child Healthcare Department, Liuzhou Maternity and Child Healthcare Hospital, Liuzhou, China
      name:Child Mental Health Research Center, Nanjing Brain Hospital Affiliated of Nanjing Medical University, Nanjing, China
      name:The State Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, China
      name:Mental Health Institute, the Second Xiangya Hospital, Central South University, Changsha, China
      name:Children’s Development Behavior Center, Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
      name:The State Key Laboratory of Medical Genetics, School of Life Sciences, Central South University, Changsha, China
      name:Collaborative Innovation Center for Genetics and Development, Shanghai, China
      name:Key Laboratory of Medical Information Research, Central South University, Changsha, China
      name:Department of Genome Sciences, University of Washington School of Medicine, Seattle, USA
      name:Howard Hughes Medical Institute, University of Washington, Seattle, USA

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