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yeast, rbps, article, proteins, human, rna, mrna, google, scholar, data, fig, protein, interactome, cas, supplementary, rnabinding, cells, cell, binding, huh, nature, enzymes, mitochondrial, peptide, conserved, hsdb, enigmrbps, biology, enzyme, set, rnas, beads, analysis, motifs, metabolic, address, crosslinking, samples, inparanoid, nat, content, gene, fdr, database, performed, min, present, number, functions, rbp,

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nature portfolio privacy policy advertising nature 494 nature 290 nature social media ovarian research middle upper tools 0/ reprints regulatory rna-binding proteins thermo fisher scientific complete mass-spectrometric map transcriptome-wide binding sites noncoding rna revolution-trashing double-stranded rna viruses enhance rna-binding specificity clear rna-binding specificity regular lc-ms runs mitochondrial cardiomyopathy/neuropathy syndrome cell type-specific expression research rna-binding mitochondrial enzyme proteome-wide protein quantification bifunctional methyltransferase--extensive moonlighting iclip--transcriptome-wide mapping humboldt-universität zu berlin rna-binding protein zc3h41 mammalian mrna-binding proteins photoactivatable-ribonucleoside-enhanced crosslinking rna-binding protein repertoire conserved rna-binding activity human rna-binding proteins rna-protein crosslink sites rna-binding orthologous proteins author correspondence defined rna-binding domains 2 ml screw-capped tubes tap-tagged yeast strains tap-tagged yeast proteins estimated energy content show dose-dependent enrichment disordered amino-acid residues permissions post-transcriptional gene regulation anti-gpf magnetic beads lc-ms/ms core mrna interactome mitochondrial hydroxysteroid dehydrogenase

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         headline:The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
         description:RNA-binding proteins (RBPs) exert a broad range of biological functions. To explore the scope of RBPs across eukaryotic evolution, we determined the in vivo RBP repertoire of the yeast Saccharomyces cerevisiae and identified 678 RBPs from yeast and additionally 729 RBPs from human hepatocytic HuH-7 cells. Combined analyses of these and recently published data sets define the core RBP repertoire conserved from yeast to man. Conserved RBPs harbour defined repetitive motifs within disordered regions, which display striking evolutionary expansion. Only 60% of yeast and 73% of the human RBPs have functions assigned to RNA biology or structural motifs known to convey RNA binding, and many intensively studied proteins surprisingly emerge as RBPs (termed ‘enigmRBPs’), including almost all glycolytic enzymes, pointing to emerging connections between gene regulation and metabolism. Analyses of the mitochondrial hydroxysteroid dehydrogenase (HSD17B10) uncover the RNA-binding specificity of an enigmRBP. RNA-binding proteins (RBPs) are implicated in many biological functions. Here the authors expand the human and yeast RNA interactome identifying new and conserved RBPs, several of which with no prior function assigned to RNA biology or structural motifs known to mediate RNA-binding, and suggesting new roles of RNA as modulators of protein function.
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      headline:The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
      description:RNA-binding proteins (RBPs) exert a broad range of biological functions. To explore the scope of RBPs across eukaryotic evolution, we determined the in vivo RBP repertoire of the yeast Saccharomyces cerevisiae and identified 678 RBPs from yeast and additionally 729 RBPs from human hepatocytic HuH-7 cells. Combined analyses of these and recently published data sets define the core RBP repertoire conserved from yeast to man. Conserved RBPs harbour defined repetitive motifs within disordered regions, which display striking evolutionary expansion. Only 60% of yeast and 73% of the human RBPs have functions assigned to RNA biology or structural motifs known to convey RNA binding, and many intensively studied proteins surprisingly emerge as RBPs (termed ‘enigmRBPs’), including almost all glycolytic enzymes, pointing to emerging connections between gene regulation and metabolism. Analyses of the mitochondrial hydroxysteroid dehydrogenase (HSD17B10) uncover the RNA-binding specificity of an enigmRBP. RNA-binding proteins (RBPs) are implicated in many biological functions. Here the authors expand the human and yeast RNA interactome identifying new and conserved RBPs, several of which with no prior function assigned to RNA biology or structural motifs known to mediate RNA-binding, and suggesting new roles of RNA as modulators of protein function.
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            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Tomaž Curk
      affiliation:
            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
            name:Present address: University of Ljubljana, Faculty of Computer and Information Science, Večna pot 113, SI-1001 Ljubljana, Slovenia
            address:
               name:Present address: University of Ljubljana, Faculty of Computer and Information Science, Večna pot 113, SI-1001 Ljubljana, Slovenia,
               type:PostalAddress
            type:Organization
      name:Sophia Foehr
      affiliation:
            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Wolfgang Huber
      url:http://orcid.org/0000-0002-0474-2218
      affiliation:
            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Jeroen Krijgsveld
      affiliation:
            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Matthias W. Hentze
      affiliation:
            name:European Molecular Biology Laboratory (EMBL)
            address:
               name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
               type:PostalAddress
            type:Organization
      email:[email protected]
PostalAddress:
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:Present address: Molecular Infection Biology, IRI for the Life Sciences & Institut für Biologie, Humboldt-Universität zu Berlin, Philippstrasse 13, Berlin 10115, Germany,
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:Present address: Computational Genome Biology, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, Heidelberg 69120, Germany,
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:Present address: Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK,
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:Present address: Cell Signaling and Mass Spectrometry, Max Delbrück Center Berlin, Robert-Rössle-Straße 10, Berlin 13125, Germany,
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:Present address: University of Ljubljana, Faculty of Computer and Information Science, Večna pot 113, SI-1001 Ljubljana, Slovenia,
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany
      name:European Molecular Biology Laboratory (EMBL), Heidelberg, Germany

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