
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - depmap
Description:
The depmap package is a data package that accesses datsets from the Broad Institute DepMap cancer dependency study using ExperimentHub. Datasets from the most current release are available, including RNAI and CRISPR-Cas9 gene knockout screens quantifying the genetic dependency for select cancer cell lines. Additional datasets are also available pertaining to the log copy number of genes for select cell lines, protein expression of cell lines as measured by reverse phase protein lysate microarray (RPPA),
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Keywords {🔍}
package, bioconductor, depmap, release, version, data, packages, cancer, dependency, datasets, cell, source, broad, institute, experimenthub, lines, gatto, enter, install, binary, learn, developers, started, map, current, select, protein, adds, dataset, license, laurent, aut, orcid, killian, httpsbioconductororgpackagesdepmap, installation, start, documentation, system, html, script, details, url, macos, repository, git, clone, reports, code, registration,
Topics {✒️}
org/packages/depmap source repository joint galaxy/bioconductor conference broad institute depmap org/packages/depmap 19q3 release adds 20q2 release adds source package bioconductor release source repository select cell lines bioconductor support site log copy number script reference manual current release git clone https gz windows binary data package depmap package drug-candidate compounds creative commons license laurent gatto [cre details biocviews tibble system requirements theo killian [aut] genetic dependency package installed package version 1 cell lines started install release packages protein expression aut] orcid script depmap package data made additional datasets supplementary datasets datasets found //bioconductor bioconductor macos binary registration open accesses datsets including rnai mutation calls drug_dependency dataset proteomic dataset quantitative profiling mass spectrometry
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