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Keywords {🔍}

chr, methrix, object, cpgs, reference, methrixdata, false, bsseq, pair, class, meth, package, files, subset, methylation, bedgraph, basic, coverage, ncpgs, nsamples, ish, loci, sites, true, missing, samples, list, operations, genome, sample, finished, elapsed, cpu, matrix, type, report, summary, function, bedgraphs, generated, analysis, matrices, version, import, cbedgraphgz, nbedgraphgz, normal, contigs, processing, granges,

Topics {✒️}

/usr/lib/x86_64-linux-gnu/lapack/liblapack basic summary statistics converting methrix import bedgraph files memory sessioninfo sessioninfo large bedgraph files hg19 remove snps methylation/coverage matrices differential methylation calling methylation calling program disk hdf5 arrays minor allele frequencies /home/biocbuild/bbs-3 filter sites based basic info adds cpgs missing chromosme chr21 methrix seqlengths coverage filter attach loci info common snps based reading total reference cpgs compepigen/methrix chromosome names cancer 'cancer' normal pair = pair1 pair2 introduction overview arguments chr_idx start_idx hg19 subset files = bdg_files package = 'methrix' report package intended /lib/librblas samples resulting na class methrix �coverage’ matrices coverage methrix large matrices seqlengths methrix annotation plot_pca package installation package incompatibilities generate bsseq object ref_cpgs = hg19_cpgs meth = methrix

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