
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - vulcan
Description:
Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a package that interrogates gene regulatory networks to infer cofactors significantly enriched in a differential binding signature coming from ChIP-Seq data. In order to do so, our package combines strategies from different BioConductor packages: DESeq for data normalization, ChIPpeakAnno and DiffBind for annotation and definition of ChIP-Seq genomic peaks, csaw to define optimal peak width and viper for applying a regulatory network over a differential binding signature.
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Keywords {🔍}
bioconductor, package, packages, vulcan, version, chipseq, networks, release, source, virtual, data, analysis, install, binary, learn, developers, started, software, regulatory, differential, binding, signature, deseq, chippeakanno, diffbind, csaw, viper, federico, giorgi, installation, start, enter, documentation, system, pdf, details, bioc, stats, url, macos, vulcantgz, repository, git, clone, reports, code, registration, open, gbcc, joint,
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org/packages/vulcan source repository virtual chip-seq analysis joint galaxy/bioconductor conference chip-seq genomic peaks bioconductor release tgz source repository source package package combines strategies chip-seq data bioconductor packages differential binding signature release //code bioconductor support site script reference manual gz windows binary zip macos binary tgz macos binary git clone https package installed details biocviews biobase system requirements started install packages package data normalization regulatory network bioconductor //bioconductor org registration open networks doi quietly = true older versions lgpl-3 depends locfit imports developer access released version devel version systemsbiology version view documentation pdf news url download stats install //git vulcan software bioc bioc 3
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