
BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - veloviz
Description:
VeloViz uses each cellโs current observed and predicted future transcriptional states inferred from RNA velocity analysis to build a nearest neighbor graph between cells in the population. Edges are then pruned based on a cosine correlation threshold and/or a distance threshold and the resulting graph is visualized using a force-directed graph layout algorithm. VeloViz can help ensure that relationships between cell states are reflected in the 2D embedding, allowing for more reliable representation of underlying cellular trajectories.
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23 years and 7 months (reg. 2001-11-19).
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Keywords {๐}
bioconductor, package, veloviz, packages, version, release, source, visualizing, cell, trajectories, graph, atta, aut, orcid, enter, install, binary, learn, developers, started, software, rnavelocity, informed, embeddings, cells, states, build, threshold, cellular, lyla, fan, installation, start, documentation, system, details, bioc, stats, url, macos, veloviztgz, repository, git, clone, reports, code, registration, open, gbcc, joint,
Topics {โ๏ธ}
org/packages/veloviz source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package rna velocity analysis visualizing cellular trajectories release build //code bioconductor support site underlying cellular trajectories nearest neighbor graph lyla atta [aut script reference manual package installed gz windows binary cosine correlation threshold git clone https tgz macos binary details biocviews stats system requirements package cell states packages started install 2d embedding org/content/10 resulting graph cre] orcid macos binary bioconductor //bioconductor distance threshold download stats registration open current observed pruned based reliable representation quietly = true older versions merfish data pdf news gpl-3 depends developer access org released version devel version visualization version view documentation
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