
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - txcutr
Description:
Various mRNA sequencing library preparation methods generate sequencing reads specifically from the transcript ends. Analyses that focus on quantification of isoform usage from such data can be aided by using truncated versions of transcriptome annotations, both at the alignment or pseudo-alignment stage, as well as in downstream analysis. This package implements some convenience methods for readily generating such truncated annotations and their corresponding sequences.
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Keywords {🔍}
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org/packages/txcutr source repository bioconductor release tgz source repository source package org/packages/txcutr european bioconductor conference release //code bioconductor support site script reference manual gz windows binary zip macos binary tgz macos binary mervin fansler [aut git clone https package implements package installed details biocviews utils system requirements package version 1 pseudo-alignment stage started install sequencing packages package convenience methods transcriptome cutter //bioconductor bioconductor transcriptome annotations registration open transcript ends isoform usage truncated versions downstream analysis readily generating truncated annotations cre] orcid quietly = true older versions pdf news gpl-3 depends methods developer access released version devel version transcriptomics version org view documentation url
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