BIOCONDUCTOR . ORG {
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Title:
Bioconductor - transomics2cytoscape
Description:
transomics2cytoscape generates a file for 3D transomics visualization by providing input that specifies the IDs of multiple KEGG pathway layers, their corresponding Z-axis heights, and an input that represents the edges between the pathway layers. The edges are used, for example, to describe the relationships between kinase on a pathway and enzyme on another pathway. This package automates creation of a transomics network as shown in the figure in Yugi.2014 (https://doi.org/10.1016/j.celrep.2014.07.021) using Cytoscape automation (https://doi.org/10.1186/s13059-019-1758-4).
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Keywords {🔍}
bioconductor, package, transomicscytoscape, packages, version, release, pathway, source, software, network, visualization, cytoscape, yugi, nishida, enter, install, binary, learn, developers, started, transomic, transomics, input, kegg, layers, edges, kozo, aut, orcid, installation, start, documentation, system, details, bioc, url, macos, transomicscytoscapetgz, repository, git, clone, reports, code, registration, open, gbcc, joint, galaxybioconductor, conference, search,
Topics {✒️}
org/packages/transomics2cytoscape source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package package automates creation trans-omic networks release //code 3d transomics visualization bioconductor support site z-axis heights script reference manual gz windows binary zip macos binary tgz macos binary kozo nishida [aut package installed git clone https details biocviews pbapply system requirements package packages started install 5-dimensional visualization transomics network pathway layers cre] orcid transomics2cytoscape generates bioconductor //bioconductor automated software software version registration open tool set quietly = true older versions pdf news developer access download stats released version devel version cytoscape automation providing input /articles/s41540-024-00342-8 view documentation 0 url install org/10 org
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