BIOCONDUCTOR . ORG {
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Title:
Bioconductor - tomoda
Description:
This package provides many easy-to-use methods to analyze and visualize tomo-seq data. The tomo-seq technique is based on cryosectioning of tissue and performing RNA-seq on consecutive sections. (Reference: Kruse F, Junker JP, van Oudenaarden A, Bakkers J. Tomo-seq: A method to obtain genome-wide expression data with spatial resolution. Methods Cell Biol. 2016;135:299-307. doi:10.1016/bs.mcb.2016.01.006) The main purpose of the package is to find zones with similar transcriptional profiles and spatially expressed genes in a tomo-seq sample. Several visulization functions are available to create easy-to-modify plots.
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Keywords {🔍}
package, bioconductor, version, packages, tomoda, tomoseq, data, release, source, methods, liu, enter, install, license, reports, binary, learn, developers, started, software, analysis, rnaseq, reference, spatial, find, wendao, httpsbioconductororgpackagestomoda, installation, start, documentation, system, text, details, bioc, stats, url, macos, tomodatgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu,
Topics {✒️}
org/packages/tomoda source repository /liuwd15/tomoda bug reports joint galaxy/bioconductor conference tomo-seq data analysis visualize tomo-seq data bioconductor release tgz source repository source package org/packages/tomoda release //code tomo-seq technique tomo-seq sample bioconductor support site performing rna-seq /liuwd15/tomoda/issues find zones similar transcriptional profiles spatially expressed genes gz windows binary zip macos binary tgz macos binary wendao liu [aut git clone https script reference manual details biocviews summarizedexperiment system requirements methods cell biol package installed package version 1 tomo-seq started install packages package //bioconductor bioconductor registration open consecutive sections junker jp van oudenaarden main purpose visulization functions modify plots cre] orcid quietly = true older versions pdf news developer access released version devel version
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