BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - syntenet
Description:
syntenet can be used to infer synteny networks from whole-genome protein sequences and analyze them. Anchor pairs are detected with the MCScanX algorithm, which was ported to this package with the Rcpp framework for R and C++ integration. Anchor pairs from synteny analyses are treated as an undirected unweighted graph (i.e., a synteny network), and users can perform: i. network clustering; ii. phylogenomic profiling (by identifying which species contain which clusters) and; iii. microsynteny-based phylogeny reconstruction with maximum likelihood.
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23 years and 7 months (reg. 2001-11-19).
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Keywords {🔍}
bioconductor, package, packages, version, syntenet, synteny, release, aut, orcid, source, networks, network, install, reports, binary, learn, developers, started, software, inference, analysis, wholegenome, anchor, pairs, rcpp, fabrício, almeidasilva, installation, start, enter, documentation, system, details, bioc, stats, url, macos, syntenettgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu,
Topics {✒️}
org/packages/syntenet source repository /almeidasilvaf/syntenet bug reports joint galaxy/bioconductor conference fabrício almeida-silva [aut microsynteny-based phylogeny reconstruction bioconductor release tgz source repository source package release //code bioconductor support site genome protein sequences undirected unweighted graph script reference manual gz windows binary zip macos binary tgz macos binary package installed git clone https infer synteny networks details biocviews intergraph system requirements packages started install package cre] orcid synteny networks bioconductor //bioconductor synteny analyses synteny network registration open anchor pairs mcscanx algorithm phylogenomic profiling maximum likelihood quietly = true older versions pdf news gpl-3 depends developer access released version devel version wholegenome version network clustering org/ org rcpp framework view documentation url
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