
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - synlet
Description:
Select hits from synthetic lethal RNAi screen data. For example, there are two identical celllines except one gene is knocked-down in one cellline. The interest is to find genes that lead to stronger lethal effect when they are knocked-down further by siRNA. Quality control and various visualisation tools are implemented. Four different algorithms could be used to pick up the interesting hits. This package is designed based on 384 wells plates, but may apply to other platforms with proper configuration.
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Keywords {🔍}
package, bioconductor, version, packages, synlet, hits, lethal, release, source, synthetic, rnai, screen, data, chunxuan, shao, enter, install, binary, learn, developers, started, software, selection, knockeddown, find, control, httpsbioconductororgpackagessynlet, installation, start, documentation, system, details, bioc, stats, url, macos, synlettgz, repository, git, clone, reports, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu,
Topics {✒️}
org/packages/synlet source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/synlet quality control stronger lethal effect release //code bioconductor support site find genes script reference manual gz windows binary zip macos binary tgz macos binary chunxuan shao [aut git clone https package installed details biocviews utils system requirements package version 2 started install packages package //bioconductor bioconductor data registration open hits selection select hits identical celllines visualisation tools interesting hits designed based 384 wells plates proper configuration cre] maintainer quietly = true older versions working demo pdf news gpl-3 depends developer access org released version devel version visualization version doi view documentation
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