
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - spatzie
Description:
Identifies motifs that are significantly co-enriched from enhancer-promoter interaction data. While enhancer-promoter annotation is commonly used to define groups of interaction anchors, spatzie also supports co-enrichment analysis between preprocessed interaction anchors. Supports BEDPE interaction data derived from genome-wide assays such as HiC, ChIA-PET, and HiChIP. Can also be used to look for differentially enriched motif pairs between two interaction experiments.
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Keywords {🔍}
bioconductor, package, packages, spatzie, version, interaction, motif, release, source, data, enhancerpromoter, analysis, chiapet, hammelman, orcid, enter, install, binary, learn, developers, started, software, enriched, pairs, anchors, supports, coenrichment, hic, jennifer, aut, cph, krismer, gifford, transcription, installation, start, documentation, system, html, details, bioc, stats, url, macos, spatzietgz, repository, git, clone, reports, code,
Topics {✒️}
org/packages/spatzie source repository joint galaxy/bioconductor conference bioconductor release enhancer-promoter interaction data tgz source repository source package enriched motif pairs html reference manual release //code bioconductor support site enhancer-promoter annotation enhancer-promoter interactions genome-wide assays gz windows binary zip macos binary tgz macos binary preprocessed interaction anchors jennifer hammelman [aut chia-pet david gifford [ths package installed git clone https details biocviews utils system requirements packages started install package interaction anchors enrichment analysis interaction experiments transcription version bioconductor //bioconductor cph] orcid gifford dk registration open identifies motifs define groups quietly = true older versions single call pdf news gpl-3 depends developer access released version devel version 1093/nar/gkac036 org/10 org
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