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BIOCONDUCTOR . ORG {}

  1. Analyzed Page
  2. Matching Content Categories
  3. CMS
  4. Monthly Traffic Estimate
  5. How Does Bioconductor.org Make Money
  6. Keywords
  7. Topics
  8. Questions
  9. Social Networks
  10. External Links
  11. Analytics And Tracking
  12. Libraries
  13. Hosting Providers
  14. CDN Services

We are analyzing https://www.bioconductor.org/packages/release/bioc/html/slalom.html.

Title:
Bioconductor - slalom
Description:
slalom is a scalable modelling framework for single-cell RNA-seq data that uses gene set annotations to dissect single-cell transcriptome heterogeneity, thereby allowing to identify biological drivers of cell-to-cell variability and model confounding factors. The method uses Bayesian factor analysis with a latent variable model to identify active pathways (selected by the user, e.g. KEGG pathways) that explain variation in a single-cell RNA-seq dataset. This an R/C++ implementation of the f-scLVM Python package. See the publication describing the method at https://doi.org/10.1186/s13059-017-1334-8.
Website Age:
23 years and 7 months (reg. 2001-11-19).

Matching Content Categories {📚}

  • Technology & Computing
  • Education
  • Shopping

Content Management System {📝}

What CMS is bioconductor.org built with?

Custom-built

No common CMS systems were detected on Bioconductor.org, and no known web development framework was identified.

Traffic Estimate {📈}

What is the average monthly size of bioconductor.org audience?

🚀 Good Traffic: 50k - 100k visitors per month


Based on our best estimate, this website will receive around 53,093 visitors per month in the current month.

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How Does Bioconductor.org Make Money? {💸}

We're unsure how the site profits.

Websites don't always need to be profitable; some serve as platforms for education or personal expression. Websites can serve multiple purposes. And this might be one of them. Bioconductor.org might be cashing in, but we can't detect the method they're using.

Keywords {🔍}

bioconductor, package, packages, slalom, version, singlecell, aut, rnaseq, release, source, davis, mccarthy, enter, install, binary, learn, developers, started, software, latent, variable, data, scalable, identify, model, method, factor, analysis, pathways, kegg, fsclvm, buettner, pratanwanich, marioni, stegle, installation, start, documentation, system, details, bioc, stats, url, macos, repository, git, clone, reports, code, registration,

Topics {✒️}

single-cell rna-seq data single-cell rna-seq dataset org/packages/slalom source repository single-cell rna-seqr joint galaxy/bioconductor conference f-sclvm python package bioconductor release source package source repository release latent variable model //code bioconductor support site gene set annotations identify biological drivers model confounding factors bayesian factor analysis versatile factor analysis script reference manual davis mccarthy [aut gz windows binary package installed identify active pathways florian buettner [aut] naruemon pratanwanich [aut] john marioni [aut] git clone https zip macos binary scalable modelling framework details biocviews stats system requirements package packages started install cell variability �f-sclvm macos binary bioconductor //bioconductor mccarthy dj download stats registration open cell kegg pathways explain variation publication describing � genome biology quietly = true older versions pdf news

Questions {❓}

  • Need some help?

Social Networks {👍}(2)

External Links {🔗}(11)

Analytics and Tracking {📊}

  • Google Analytics
  • Google Analytics 4
  • Google Tag Manager

Libraries {📚}

  • jQuery

Emails and Hosting {✉️}

Mail Servers:

  • mx1.forwardemail.net
  • mx2.forwardemail.net

Name Servers:

  • ns-1459.awsdns-54.org
  • ns-1784.awsdns-31.co.uk
  • ns-876.awsdns-45.net
  • ns-91.awsdns-11.com

CDN Services {📦}

  • Cloudflare

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