BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - sitadela
Description:
Provides an interface to build a unified database of genomic annotations and their coordinates (gene, transcript and exon levels). It is aimed to be used when simple tab-delimited annotations (or simple GRanges objects) are required instead of the more complex annotation Bioconductor packages. Also useful when combinatorial annotation elements are reuired, such as RefSeq coordinates with Ensembl biotypes. Finally, it can download, construct and handle annotations with versioned genes and transcripts (where available, e.g. RefSeq and latest Ensembl). This is particularly useful in precision medicine applications where the latter must be reported.
Website Age:
23 years and 7 months (reg. 2001-11-19).
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Keywords {🔍}
package, bioconductor, packages, version, sitadela, simple, annotation, release, moulos, source, tabdelimited, genomic, annotations, enter, install, reports, binary, learn, developers, started, software, easy, provision, complete, variety, sources, organisms, build, database, coordinates, refseq, ensembl, download, panagiotis, httpsbioconductororgpackagessitadela, installation, start, documentation, system, details, bioc, url, macos, sitadelatgz, repository, git, clone, code, registration, open,
Topics {✒️}
org/packages/sitadela source repository /pmoulos/sitadela bug reports joint galaxy/bioconductor conference bioconductor release simple tab-delimited annotations tgz source repository org/packages/sitadela source package release build combinatorial annotation elements //code bioconductor support site /pmoulos/sitadela/issues precision medicine applications script reference manual gz windows binary zip macos binary tgz macos binary simple annotation database panagiotis moulos [aut simple granges objects git clone https details biocviews utils system requirements package installed package version 1 genomic annotations started install packages package handle annotations //bioconductor bioconductor unified database registration open easy provision exon levels ensembl biotypes versioned genes latest ensembl cre] maintainer quietly = true older versions pdf news developer access org released version devel version workflowstep version
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