
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - scruff
Description:
A pipeline which processes single cell RNA-seq (scRNA-seq) reads from CEL-seq and CEL-seq2 protocols. Demultiplex scRNA-seq FASTQ files, align reads to reference genome using Rsubread, and generate UMI filtered count matrix. Also provide visualizations of read alignments and pre- and post-alignment QC metrics.
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Keywords {🔍}
bioconductor, package, scruff, version, packages, rnaseq, single, cell, release, source, umi, reads, zhe, wang, aut, enter, install, license, reports, binary, learn, developers, started, software, filtering, facilitator, scrnaseq, celseq, reference, rsubread, campbell, httpsbioconductororgpackagesscruff, installation, start, documentation, system, text, details, bioc, url, macos, scrufftgz, repository, git, clone, code, registration, open, gbcc, joint,
Topics {✒️}
org/packages/scruff source repository joint galaxy/bioconductor conference bioconductor release post-alignment qc metrics tgz source repository source package org/packages/scruff bug reports release //code bioconductor support site gz windows binary zip macos binary tgz macos binary zhe wang [aut /campbio/scruff/issues cel-seq2 protocols script reference manual package installed scrna-seq junming hu [aut] package version 1 git clone https details biocviews parallelly system requirements cel-seq package started install packages align reads //bioconductor bioconductor reference genome registration open provide visualizations read alignments quietly = true older versions pdf news developer access org download stats released version devel version workflowstep version text license view documentation url install //git
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