BIOCONDUCTOR . ORG {
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Title:
Bioconductor - scider
Description:
scider is a user-friendly R package providing functions to model the global density of cells in a slide of spatial transcriptomics data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. After modelling density, the package allows for serveral downstream analysis, including colocalization analysis, boundary detection analysis and differential density analysis.
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Keywords {🔍}
package, bioconductor, packages, version, scider, spatial, density, release, analysis, source, aut, orcid, chen, enter, install, license, reports, binary, learn, developers, started, software, celltype, intercorrelation, functions, transcriptomics, spatialexperiment, liu, yunshun, httpsbioconductororgpackagesscider, installation, start, documentation, system, text, details, bioc, stats, url, macos, scidertgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor,
Topics {✒️}
org/packages/scider source repository spatial cell-type inter-correlation io/scider/ bug reports spatial transcriptomics-related packages joint galaxy/bioconductor conference bioconductor release tgz source repository org/packages/scider source package package providing functions release //code spatial transcriptomics data bioconductor support site serveral downstream analysis including colocalization analysis boundary detection analysis yunshun chen [aut script reference manual gz windows binary zip macos binary tgz macos binary git clone https /chenlaboratory/scider/issues details biocviews grdevices system requirements differential density analysis package installed package version 1 /chenlaboratory/scider https started install packages package cre] orcid transcriptomics version bioconductor //bioconductor registration open user-friendly built based allowing integration quietly = true older versions pdf news developer access org released version devel version text license global density
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