BIOCONDUCTOR . ORG {
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Title:
Bioconductor - recount
Description:
Explore and download data from the recount project available at https://jhubiostatistics.shinyapps.io/recount/. Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using http://bioconductor.org/packages/derfinder you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.
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Keywords {๐}
bioconductor, recount, package, version, colladotorres, packages, ctb, jaffe, leek, orcid, rnaseq, download, data, project, ellis, langmead, release, nellore, source, explore, doi, coverage, expression, taub, kammers, hansen, enter, repository, install, start, reports, binary, learn, developers, started, software, rangedsummarizedexperiment, objects, gene, phenotype, metadata, bigwig, differential, analysis, httpwwwnaturecomnbtjournalvnfullnbthtml, leonardo, aut, human, approved, httpsgithubcomleekgrouprecount,
Topics {โ๏ธ}
/nbt/journal/v35/n4/full/nbt org/packages/recount source repository /leekgroup/recount bug reports ๏ฟฝreproducible rna-seq analysis joint galaxy/bioconductor conference bioconductor release exon-exon junctions level tgz source repository source package leonardo collado-torres [aut org/packages/recount release org/packages/derfinder script reference manual //code coverage bigwig file multi-experiment resource de hoon mj gz windows binary zip macos binary tgz macos binary bioconductor support site recount package package installed details biocviews utils system requirements kai kammers [ctb] package version 1 git clone https abhinav nellore [ctb] download rangedsummarizedexperiment objects ๏ฟฝrecount-brain recount project started install package bioconductor [version 1 phenotype metadata /leekgroup/recount packages curated repository taub [ctb] cre] orcid ths] orcid rangedsummarizedexperiment objects leek [aut collado-torres hansen kd 1038/nbt software version io/recount/
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