BIOCONDUCTOR . ORG {
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Title:
Bioconductor - profileplyr
Description:
Quick and straightforward visualization of read signal over genomic intervals is key for generating hypotheses from sequencing data sets (e.g. ChIP-seq, ATAC-seq, bisulfite/methyl-seq). Many tools both inside and outside of R and Bioconductor are available to explore these types of data, and they typically start with a bigWig or BAM file and end with some representation of the signal (e.g. heatmap). profileplyr leverages many Bioconductor tools to allow for both flexibility and additional functionality in workflows that end with visualization of the read signal.
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23 years and 7 months (reg. 2001-11-19).
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Keywords {🔍}
bioconductor, package, profileplyr, packages, version, signal, source, visualization, read, genomic, release, annotation, ranges, start, carroll, barrows, enter, install, bioc, binary, learn, developers, started, software, sequencing, data, chipseq, tools, end, workflows, tom, doug, gmailcom, httpsbioconductororgpackagesprofileplyr, installation, documentation, system, details, stats, txdbhsapiensucschgknowngene, txdbmmusculusucscmmknowngene, url, macos, profileplyrtgz, repository, git, clone, reports, code, registration,
Topics {✒️}
org/packages/profileplyr source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/profileplyr source packages release //code bioconductor support site script reference manual gz windows binary zip macos binary tgz macos binary package installed bisulfite/methyl-seq package version 1 git clone https details biocviews rsamtools system requirements source archive sequencing data sets package started install packages bioconductor tools workflows software version profileplyr leverages tom carroll chip-seq atac-seq bioconductor //bioconductor profileplyr doi registration open genomic ranges genomic intervals generating hypotheses bam file additional functionality quietly = true older versions pdf news summarizedexperiment imports developer access released version devel version read signal view documentation
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