BIOCONDUCTOR . ORG {
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Title:
Bioconductor - pram
Description:
Publicly available RNA-seq data is routinely used for retrospective analysis to elucidate new biology. Novel transcript discovery enabled by large collections of RNA-seq datasets has emerged as one of such analysis. To increase the power of transcript discovery from large collections of RNA-seq datasets, we developed a new R package named Pooling RNA-seq and Assembling Models (PRAM), which builds transcript models in intergenic regions from pooled RNA-seq datasets. This package includes functions for defining intergenic regions, extracting and pooling related RNA-seq alignments, predicting, selected, and evaluating transcript models.
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Keywords {π}
package, bioconductor, rnaseq, packages, pram, version, pooling, transcript, models, datasets, release, source, assembling, intergenic, liu, aut, enter, install, reports, binary, learn, developers, started, software, analysis, discovery, large, collections, regions, peng, dewey, keleΕ, sequencing, installation, start, documentation, system, details, bioc, url, macos, pramtgz, repository, git, clone, code, registration, open, gbcc, joint,
Topics {βοΈ}
org/packages/pram source repository /pliu55/pram bug reports joint galaxy/bioconductor conference pooled rna-seq datasets pooling rna-seq datasets bioconductor release tgz source repository source package package includes functions pooling rna-seq rna-seq datasets release //code rna-seq data bioconductor support site /pliu55/pram/issues script reference manual gz windows binary zip macos binary tgz macos binary builds transcript models evaluating transcript models discovering intergenic transcripts transcript discovery enabled package installed peng liu [aut defining intergenic regions git clone https details biocviews wisc+bioconductor packages started install package pooling approach transcript discovery assembling models intergenic regions large collections dewey [aut] bioconductor //bioconductor org registration open soukup aa bresnick eh dewey cn οΏ½ genome research quietly = true older versions pdf news
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