BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - pmp
Description:
Methods and tools for (pre-)processing of metabolomics datasets (i.e. peak matrices), including filtering, normalisation, missing value imputation, scaling, and signal drift and batch effect correction methods. Filtering methods are based on: the fraction of missing values (across samples or features); Relative Standard Deviation (RSD) calculated from the Quality Control (QC) samples; the blank samples. Normalisation methods include Probabilistic Quotient Normalisation (PQN) and normalisation to total signal intensity. A unified user interface for several commonly used missing value imputation algorithms is also provided. Supported methods are: k-nearest neighbours (knn), random forests (rf), Bayesian PCA missing value estimator (bpca), mean or median value of the given feature and a constant small value. The generalised logarithm (glog) transformation algorithm is available to stabilise the variance across low and high intensity mass spectral features. Finally, this package provides an implementation of the Quality Control-Robust Spline Correction (QCRSC) algorithm for signal drift and batch effect correction of mass spectrometry-based datasets.
Website Age:
23 years and 7 months (reg. 2001-11-19).
Matching Content Categories {📚}
- Technology & Computing
- Mobile Technology & AI
- Shopping
Content Management System {📝}
What CMS is bioconductor.org built with?
Custom-built
No common CMS systems were detected on Bioconductor.org, and no known web development framework was identified.
Traffic Estimate {📈}
What is the average monthly size of bioconductor.org audience?
🚀 Good Traffic: 50k - 100k visitors per month
Based on our best estimate, this website will receive around 50,019 visitors per month in the current month.
However, some sources were not loaded, we suggest to reload the page to get complete results.
check SE Ranking
check Ahrefs
check Similarweb
check Ubersuggest
check Semrush
How Does Bioconductor.org Make Money? {💸}
We find it hard to spot revenue streams.
Not all websites focus on profit; some are designed to educate, connect people, or share useful tools. People create websites for numerous reasons. And this could be one such example. Bioconductor.org could be secretly minting cash, but we can't detect the process.
Keywords {🔍}
package, bioconductor, version, signal, correction, packages, batch, methods, pmp, metabolomics, datasets, peak, release, normalisation, missing, drift, effect, mass, source, matrix, processing, samples, quality, aut, lloyd, enter, install, html, script, binary, learn, developers, started, software, filtering, imputation, features, control, intensity, algorithm, spectral, jankevics, gavin, rhys, weber, httpsbioconductororgpackagespmp, installation, start, documentation, system,
Topics {✒️}
org/packages/pmp source repository joint galaxy/bioconductor conference bioconductor release org/packages/pmp source package quality control mass spectrometry-based datasets source repository release //code batch effect correction total signal intensity bioconductor support site andris jankevics [aut] signal batch correction relative standard deviation unified user interface k-nearest neighbours script reference manual gz windows binary zip macos binary tgz macos binary peak matrix processing script signal drift git clone https package installed details biocviews utils system requirements package version 1 bayesian pca missing mass spectrometry started install packages package weber rjm signal drift software version peak matrices filtering methods supported methods metabolomics datasets //bioconductor bioconductor lloyd gr registration open including filtering random forests constant small generalised logarithm quietly = true
Questions {❓}
- Need some help?
Social Networks {👍}(2)
External Links {🔗}(14)
- What's the financial gain of https://doi.org/doi:10.18129/B9.bioc.pmp?
- What's the income generated by https://doi.org/10.18129/B9.bioc.pmp each month?
- Profit of http://cran.rstudio.com/web/packages/missForest/index.html
- Learn how profitable http://cran.rstudio.com/web/packages/ggplot2/index.html is on a monthly basis
- What's http://cran.rstudio.com/web/packages/matrixStats/index.html's gross income?
- What's the revenue for http://cran.rstudio.com/web/packages/reshape2/index.html?
- See how much http://cran.rstudio.com/web/packages/testthat/index.html makes per month
- How much does http://cran.rstudio.com/web/packages/covr/index.html earn?
- How much income is http://cran.rstudio.com/web/packages/knitr/index.html earning monthly?
- What's the income of http://cran.rstudio.com/web/packages/rmarkdown/index.html?
- Learn how profitable http://cran.rstudio.com/web/packages/gridExtra/index.html is on a monthly basis
- What is the earnings of http://cran.rstudio.com/web/packages/magick/index.html?
- What is the monthly revenue of https://bsky.app/profile/bioconductor.bsky.social?
- How much does https://genomic.social/@bioconductor bring in each month?
Analytics and Tracking {📊}
- Google Analytics
- Google Analytics 4
- Google Tag Manager
Libraries {📚}
- jQuery
Emails and Hosting {✉️}
Mail Servers:
- mx1.forwardemail.net
- mx2.forwardemail.net
Name Servers:
- ns-1459.awsdns-54.org
- ns-1784.awsdns-31.co.uk
- ns-876.awsdns-45.net
- ns-91.awsdns-11.com
CDN Services {📦}
- Cloudflare