BIOCONDUCTOR . ORG {
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Title:
Bioconductor - orthos
Description:
`orthos` decomposes RNA-seq contrasts, for example obtained from a gene knock-out or compound treatment experiment, into unspecific and experiment-specific components. Original and decomposed contrasts can be efficiently queried against a large database of contrasts (derived from ARCHS4, https://maayanlab.cloud/archs4/) to identify similar experiments. `orthos` furthermore provides plotting functions to visualize the results of such a search for similar contrasts.
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Keywords {🔍}
package, bioconductor, orthos, version, packages, release, contrasts, source, papasaikas, aut, orcid, enter, install, license, binary, learn, developers, search, started, software, variance, decomposition, conditional, variational, autoencoders, rnaseq, similar, panagiotis, soneson, stadler, httpsbioconductororgpackagesorthos, installation, start, documentation, system, text, details, bioc, stats, url, macos, orthostgz, repository, git, clone, reports, code, registration, open, gbcc,
Topics {✒️}
org/packages/orthos source repository conditional variational auto-encoders joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/orthos release //code bioconductor support site compound treatment experiment experiment-specific components friedrich miescher institute script reference manual panagiotis papasaikas [aut gz windows binary identify similar experiments tgz macos binary git clone https details biocviews tidyr system requirements package installed package version 1 started install packages package cre] orcid macos binary similar contrasts software version //bioconductor bioconductor decomposed contrasts registration open variance decomposition gene knock efficiently queried large database plotting functions quietly = true older versions pdf news summarizedexperiment imports developer access org released version devel version text license cloud/archs4/ view documentation
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