BIOCONDUCTOR . ORG {
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Title:
Bioconductor - msqrob2
Description:
msqrob2 provides a robust linear mixed model framework for assessing differential abundance in MS-based Quantitative proteomics experiments. Our workflows can start from raw peptide intensities or summarised protein expression values. The model parameter estimates can be stabilized by ridge regression, empirical Bayes variance estimation and robust M-estimation. msqrob2
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Keywords {๐}
bioconductor, package, proteomics, packages, msqrob, version, robust, clement, quantitative, release, data, aut, orcid, goeminne, source, model, start, regression, sticker, ctb, enter, labelfree, install, reports, binary, learn, developers, started, software, inference, workflows, raw, ridge, estimation, workflow, missing, imputation, methods, mass, lieven, gevaert, molecular, cellular, martens, installation, documentation, system, details, bioc, stats,
Topics {โ๏ธ}
proteome-wide label-free quantification org/packages/msqrob2 source repository /statomics/msqrob2 bug reports joint galaxy/bioconductor conference bioconductor release tgz source repository source package label-free workflow robust m-estimation count-based proteomics raw peptide intensities release //code bioconductor support site /statomics/msqrob2/issues model parameter estimates handle missing data robust statistical inference assessing differential abundance script reference manual gz windows binary zip macos binary tgz macos binary package installed lieven clement [aut verify imputation assumptions adriaan sticker [ctb] details biocviews codetools system requirements git clone https ridge regression ludger goeminne [ctb] package packages started install raw data ๏ฟฝrobust summarization preprocessed data model results cre] orcid workflows bioconductor //bioconductor hurde workflow missing hurdle registration open outcompetes state low missingness qfeature infrastructure ๏ฟฝmsqrob takes
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