BIOCONDUCTOR . ORG {
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Title:
Bioconductor - mina
Description:
An increasing number of microbiome datasets have been generated and analyzed with the help of rapidly developing sequencing technologies. At present, analysis of taxonomic profiling data is mainly conducted using composition-based methods, which ignores interactions between community members. Besides this, a lack of efficient ways to compare microbial interaction networks limited the study of community dynamics. To better understand how community diversity is affected by complex interactions between its members, we developed a framework (Microbial community dIversity and Network Analysis, mina), a comprehensive framework for microbial community diversity analysis and network comparison. By defining and integrating network-derived community features, we greatly reduce noise-to-signal ratio for diversity analyses. A bootstrap and permutation-based method was implemented to assess community network dissimilarities and extract discriminative features in a statistically principled way.
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Keywords {🔍}
bioconductor, package, community, mina, version, diversity, packages, microbial, network, analysis, release, guan, source, enter, install, reports, binary, learn, developers, started, software, methods, interactions, members, framework, features, rui, httpsbioconductororgpackagesmina, installation, start, documentation, system, details, bioc, stats, url, macos, minatgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu,
Topics {✒️}
org/packages/mina source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/mina bug reports release extract discriminative features //code microbial community diversity bioconductor support site taxonomic profiling data greatly reduce noise permutation-based method script reference manual gz windows binary zip macos binary tgz macos binary rui guan [aut package installed package version 1 git clone https composition-based methods details biocviews utils system requirements package community diversity started install packages microbial diversity community dynamics community members network analysis network comparison diversity analyses /guan06/mina //bioconductor bioconductor registration open increasing number microbiome datasets ignores interactions efficient ways complex interactions signal ratio statistically principled quietly = true older versions gpl depends
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