BIOCONDUCTOR . ORG {
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Title:
Bioconductor - methylscaper
Description:
methylscaper is an R package for processing and visualizing data jointly profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The package supports both single-cell and single-molecule data, and a common interface for jointly visualizing both data types through the generation of ordered representational methylation-state matrices. The Shiny app allows for an interactive seriation process of refinement and re-weighting that optimally orders the cells or DNA molecules to discover methylation patterns and nucleosome positioning.
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Keywords {🔍}
package, bioconductor, methylscaper, packages, version, data, methylation, release, source, joint, visualization, singlecell, nucleosome, bacher, enter, install, reports, binary, learn, developers, started, software, visualizing, jointly, singlemolecule, shiny, app, seriation, dna, rhonda, aut, knight, occupancy, installation, start, documentation, system, details, bioc, stats, url, macos, methylscapertgz, repository, git, clone, code, registration, open, gbcc,
Topics {✒️}
org/packages/methylscaper source repository /rhondabacher/methylscaper/ bug reports joint galaxy/bioconductor conference bioconductor release tgz source repository source package release //code bioconductor support site discover methylation patterns visualize joint methylation /rhondabacher/methylscaper/issues script reference manual bacher rhonda [aut gz windows binary tgz macos binary git clone https package supports interactive seriation process package installed details biocviews summarizedexperiment system requirements single-molecule data single-cell data nucleosome occupancy data jointly visualizing packages started install package dna methylation macos binary single-cell single-molecule data types nucleosome occupancy bioconductor //bioconductor joint visualization nucleosome positioning org registration open chromatin accessibility nome-seq scnmt-seq common interface optimally orders dna molecules gauthier ml pardo ce darst rp
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