BIOCONDUCTOR . ORG {
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Title:
Bioconductor - metagene2
Description:
This package produces metagene plots to compare coverages of sequencing experiments at selected groups of genomic regions. It can be used for such analyses as assessing the binding of DNA-interacting proteins at promoter regions or surveying antisense transcription over the length of a gene. The metagene2 package can manage all aspects of the analysis, from normalization of coverages to plot facetting according to experimental metadata. Bootstraping analysis is used to provide confidence intervals of per-sample mean coverages.
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Keywords {🔍}
package, bioconductor, metagene, version, packages, release, aut, source, plots, coverages, fournier, enter, install, reports, binary, learn, developers, started, software, produce, sequencing, regions, analysis, eric, joly, beauparlant, lippens, droit, httpsbioconductororgpackagesmetagene, installation, start, documentation, system, details, bioc, url, macos, metagenetgz, repository, git, clone, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu,
Topics {✒️}
org/packages/metagene2 source repository /arnauddroitlab/metagene2 bug reports joint galaxy/bioconductor conference bioconductor release tgz source repository org/packages/metagene2 source package produce metagene plots release //code bioconductor support site /arnauddroitlab/metagene2/issues dna-interacting proteins surveying antisense transcription provide confidence intervals script reference manual gz windows binary zip macos binary tgz macos binary eric fournier [cre metagene2 package git clone https cedric lippens [aut] details biocviews reshape2 system requirements package installed package version 1 started install packages joly beauparlant package software version //bioconductor bioconductor registration open selected groups genomic regions promoter regions plot facetting experimental metadata quietly = true older versions pdf news biocparallel imports developer access org download stats released version devel version sequencing experiments
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