BIOCONDUCTOR . ORG {
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Title:
Bioconductor - mapscape
Description:
MapScape integrates clonal prevalence, clonal hierarchy, anatomic and mutational information to provide interactive visualization of spatial clonal evolution. There are four inputs to MapScape: (i) the clonal phylogeny, (ii) clonal prevalences, (iii) an image reference, which may be a medical image or drawing and (iv) pixel locations for each sample on the referenced image. Optionally, MapScape can accept a data table of mutations for each clone and their variant allele frequencies in each sample. The output of MapScape consists of a cropped anatomical image surrounded by two representations of each tumour sample. The first, a cellular aggregate, visually displays the prevalence of each clone. The second shows a skeleton of the clonal phylogeny while highlighting only those clones present in the sample. Together, these representations enable the analyst to visualize the distribution of clones throughout anatomic space.
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Keywords {🔍}
bioconductor, mapscape, package, version, packages, clonal, release, image, sample, clone, source, smith, enter, install, binary, learn, developers, started, software, prevalence, anatomic, visualization, phylogeny, reference, representations, clones, maia, httpsbioconductororgpackagesmapscape, installation, start, documentation, system, details, bioc, url, macos, mapscapetgz, repository, git, reports, code, registration, open, gbcc, joint, galaxybioconductor, conference, search, menu, home,
Topics {✒️}
org/packages/mapscape source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/mapscape release //code bioconductor support site variant allele frequencies gz windows binary provide interactive visualization spatial clonal evolution script reference manual package installed maia smith [aut package version 1 tgz macos binary details biocviews git clone https package started install packages macos binary image reference //bioconductor bioconductor mapscape consists mapscape vignette clonal hierarchy clonal phylogeny clonal prevalences medical image referenced image visualization version mapscape doi registration open mutational information pixel locations data table cellular aggregate visually displays cre] maintainer quietly = true older versions gpl-3 depends developer access org download stats released version
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