
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - hermes
Description:
Provides classes and functions for quality control, filtering, normalization and differential expression analysis of pre-processed `RNA-seq` data. Data can be imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated from `BioMart`. Filtering for genes without too low expression or containing required annotations, as well as filtering for samples with sufficient correlation to other samples or total number of reads is supported. The standard normalization methods including cpm, rpkm and tpm can be used, and
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Keywords {🔍}
aut, bioconductor, package, packages, version, hermes, source, rnaseq, data, release, zhang, preprocessing, filtering, normalization, expression, sabanés, bové, enter, install, bioc, reports, binary, learn, developers, started, software, analyzing, reporting, control, differential, summarizedexperiment, biomart, samples, methods, deseq, daniel, bhatia, bienert, falquet, luong, midori, richardson, rossomanno, treis, yan, chang, liao, carolyn, paulson, httpsbioconductororgpackageshermes,
Topics {✒️}
org/packages/hermes source repository /insightsengineering/hermes/ bug reports pre-processed `rna-seq` data joint galaxy/bioconductor conference bioconductor release org/packages/hermes quality control tgz source repository source package source packages rna-seq data release //code bioconductor support site differential expression analysis /insightsengineering/hermes/issues script reference manual gz windows binary zip macos binary tgz macos binary package installed carolyn zhang [aut] package version 1 namrata bhatia [aut] stefanie bienert [aut] benoit falquet [aut] haocheng li [aut] jeff luong [aut] alex richardson [aut] simona rossomanno [aut] tim treis [aut] mark yan [aut] naomi chang [aut] chendi liao [aut] git clone https details biocviews utils system requirements source archive sabanés bov� package started install packages midori zhang carolyn zhang low expression software version //bioconductor bioconductor paulson [aut] registration open
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