BIOCONDUCTOR . ORG {
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Title:
Bioconductor - epistack
Description:
The epistack package main objective is the visualizations of stacks of genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data) centered at genomic regions of interest. epistack needs three different inputs: 1) a genomic score objects, such as ChIP-seq coverage or DNA methylation values, provided as a `GRanges` (easily obtained from `bigwig` or `bam` files). 2) a list of feature of interest, such as peaks or transcription start sites, provided as a `GRanges` (easily obtained from `gtf` or `bed` files). 3) a score to sort the features, such as peak height or gene expression value.
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Keywords {🔍}
package, bioconductor, epistack, packages, version, release, genomic, source, chipseq, start, guillaume, enter, install, license, binary, learn, developers, started, software, stack, profiles, signals, dna, interest, score, coverage, provided, granges, easily, obtained, files, safia, aut, devailly, installation, documentation, system, text, details, bioc, stats, url, macos, epistacktgz, repository, git, clone, reports, code, registration,
Topics {✒️}
org/packages/epistack source repository joint galaxy/bioconductor conference bioconductor release tgz source repository source package release //code bioconductor support site script reference manual /genepi-genphyse/epistack gz windows binary genomic conservation data dna methylation values devailly guillaume [cre tgz macos binary package installed git clone https visualise stack profiles details biocviews methods system requirements transcription start sites genomic score objects saci safia [aut] chip-seq coverage packages started install package macos binary stack profiles chip-seq software version bioconductor //bioconductor genomic tracks dna methyation genomic regions aut] maintainer epigenomic signals atac-seq org registration open easily obtained `bam` files `bed` files peak height gene expression quietly = true older versions pdf news developer access
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