BIOCONDUCTOR . ORG {
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Title:
Bioconductor - epiregulon.extra
Description:
Gene regulatory networks model the underlying gene regulation hierarchies that drive gene expression and observed phenotypes. Epiregulon infers TF activity in single cells by constructing a gene regulatory network (regulons). This is achieved through integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data. Links between regulatory elements and their target genes are established by computing correlations between chromatin accessibility and gene expressions.
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Keywords {π}
package, bioconductor, version, packages, epiregulonextra, gene, release, aut, source, epiregulon, regulatory, data, yao, enter, install, license, reports, binary, learn, developers, started, software, companion, additional, plotting, differential, graph, functions, network, xiaosai, orcid, wΕodarczyk, keyes, chen, httpsbioconductororgpackagesepiregulonextra, installation, start, documentation, system, text, details, bioc, url, macos, epiregulonextratgz, repository, git, clone, code, registration,
Topics {βοΈ}
joint galaxy/bioconductor conference extra/ bug reports bioconductor release tgz source repository source package extra source repository scrna-seq data release //code org/packages/epiregulon bioconductor support site drive gene expression script reference manual gz windows binary zip macos binary tgz macos binary xiaosai yao [aut timothy keyes [aut] gene regulatory network git clone https details biocviews scater system requirements companion package package installed org/browse/epiregulon package version 1 packages/epiregulon started install scatac-seq data visualization package packages gene expressions regulatory elements cre] orcid graph functions //bioconductor bioconductor registration open additional plotting observed phenotypes single cells target genes computing correlations chromatin accessibility quietly = true older versions pdf news singlecellexperiment imports developer access
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