
BIOCONDUCTOR . ORG {
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Title:
Bioconductor - edge
Description:
The edge package implements methods for carrying out differential expression analyses of genome-wide gene expression studies. Significance testing using the optimal discovery procedure and generalized likelihood ratio tests (equivalent to F-tests and t-tests) are implemented for general study designs. Special functions are available to facilitate the analysis of common study designs, including time course experiments. Other packages such as sva and qvalue are integrated in edge to provide a wide range of tools for gene expression analysis.
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Keywords {🔍}
package, bioconductor, edge, packages, version, expression, gene, release, source, differential, storey, bass, enter, install, license, reports, binary, learn, developers, started, software, extraction, methods, study, designs, analysis, sva, qvalue, john, leek, andrew, httpsbioconductororgpackagesedge, installation, start, documentation, system, pdf, text, details, bioc, url, macos, edgetgz, repository, git, clone, code, registration, open, gbcc,
Topics {✒️}
org/packages/edge source repository /jdstorey/edge bug reports joint galaxy/bioconductor conference bioconductor release tgz source repository source package org/packages/edge differential gene expression release //code differential expression analyses bioconductor support site gene expression analysis /jdstorey/edge/issues optimal discovery procedure general study designs common study designs script reference manual gz windows binary zip macos binary tgz macos binary edge package git clone https details biocviews mass system requirements package installed package version 2 started install package packages wide range f-tests t-tests //bioconductor bioconductor registration open significance testing special functions including time bass maintainer bass aj quietly = true older versions biobase imports developer access org download stats released version devel version timecourse version
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