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BIOCONDUCTOR . ORG {}

  1. Analyzed Page
  2. Matching Content Categories
  3. CMS
  4. Monthly Traffic Estimate
  5. How Does Bioconductor.org Make Money
  6. Keywords
  7. Topics
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We are analyzing https://www.bioconductor.org/packages/release/bioc/html/doubletrouble.html.

Title:
Bioconductor - doubletrouble
Description:
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v. dispersed duplication (DD). Transposon-derived duplicates (TRD) can be further subdivided into rTRD (retrotransposon-derived duplication) and dTRD (DNA transposon-derived duplication). If users want a simpler classification scheme, duplicates can also be classified into SD- and SSD-derived (small-scale duplication) gene pairs. Besides classifying gene pairs, users can also classify genes, so that each gene is assigned a unique mode of duplication. Users can also calculate substitution rates per substitution site (i.e., Ka and Ks) from duplicate pairs, find peaks in Ks distributions with Gaussian Mixture Models (GMMs), and classify gene pairs into age groups based on Ks peaks.
Website Age:
23 years and 7 months (reg. 2001-11-19).

Matching Content Categories {📚}

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Content Management System {📝}

What CMS is bioconductor.org built with?

Custom-built

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Traffic Estimate {📈}

What is the average monthly size of bioconductor.org audience?

🚀 Good Traffic: 50k - 100k visitors per month


Based on our best estimate, this website will receive around 50,019 visitors per month in the current month.
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How Does Bioconductor.org Make Money? {💸}

We can't see how the site brings in money.

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Keywords {🔍}

bioconductor, duplication, package, packages, version, doubletrouble, classification, genes, release, gene, pairs, source, duplicated, classify, users, install, reports, binary, learn, developers, started, software, identification, wholegenome, based, modes, trd, transposonderived, duplicates, substitution, site, find, peaks, fabrício, almeidasilva, aut, orcid, installation, start, enter, documentation, system, details, bioc, stats, url, macos, doubletroubletgz, repository, git,

Topics {✒️}

org/packages/doubletrouble source repository /almeidasilvaf/doubletrouble bug reports fabrício almeida-silva [aut joint galaxy/bioconductor conference bioconductor release tgz source repository source package dna transposon-derived duplication release //code genome protein sequences find peaks gaussian mixture models script reference manual gz windows binary zip macos binary tgz macos binary package installed bioconductor support site transposon-derived duplicates calculate substitution rates retrotransposon-derived duplication small-scale duplication identify duplicated genes git clone https age groups based details biocviews genomicfeatures system requirements classifying gene pairs simpler classification scheme package classify gene pairs packages started install cre] orcid duplicated genes doubletrouble aims ssd-derived substitution site gene pairs bioconductor //bioconductor classify genes duplicate pairs segmental duplication tandem duplication proximal duplication transposed duplication dispersed duplication registration open

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External Links {🔗}(16)

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Libraries {📚}

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