BIOCONDUCTOR . ORG {
}
Title:
Bioconductor - dearseq
Description:
Differential Expression Analysis RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with repeated or longitudinal data. Methods are detailed in: i) Agniel D & Hejblum BP (2017) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics, 18(4):589-604 ; and ii) Gauthier M, Agniel D, ThiΓ©baut R & Hejblum BP (2020) dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate, NAR Genomics and Bioinformatics, 2(4):lqaa093.
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Keywords {π}
bioconductor, package, packages, dearseq, version, rnaseq, analysis, data, variance, component, test, hejblum, differential, release, score, agniel, source, gauthier, aut, boris, enter, install, license, reports, binary, learn, developers, started, software, expression, gene, set, longitudinal, methods, timecourse, effectively, controls, false, discovery, rate, nar, genomics, bioinformatics, lqaa, denis, marine, installation, start, documentation, system,
Topics {βοΈ}
org/packages/dearseq source repository joint galaxy/bioconductor conference rna-seq differential analysis bioconductor release longitudinal rna-seq data tgz source repository source package differential expression analysis bug reports rna-seq data release //code bioconductor support site gene set analysis false discovery rate script reference manual gz windows binary zip macos binary tgz macos binary /borishejblum/dearseq/issues package installed gene set analyses git clone https details biocviews file license depends viridislite system requirements marine gauthier [aut] denis agniel [aut] package packages longitudinal data started install data heteroscedasticity bioconductor //bioconductor gene-wise marine gauthier hejblum [aut denis agniel registration open precision weights effectively controls nar genomics cre] orcid u-bordeaux rodolphe thiebaut οΏ½ nar genomics quietly = true older versions pdf news
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